Evidence map›Paper›PMID 22753475›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

The genome of melon (Cucumis melo L.).

Jordi Garcia-Mas, Andrej Benjak, Walter Sanseverino, Michael Bourgeois, Gisela Mir, Víctor M González, Elizabeth Hénaff, Francisco Câmara, Luca Cozzuto, Ernesto Lowy and 25 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 326 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
326citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

326 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Meta genetic analysis of melon sweetness.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Pooled it
  2. Introgression line libraries in melon (Molecular breeding : new strategies in plant improvement · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. The genomic design of fruit metabolomes.Plant communications · 2025
    Review
  19. Article
  20. Article

266 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Jordi Garcia-MasInstitut de Recerca i Tecnologia Agroalimentàries, Centre for Research in Agricultural Genomics Consejo Superior de Investigaciones Científicas-Institut de Recerca i Tecnologia Agroalimentàries-Universitat Autònoma de Barcelona-Universitat de Barcelona, 08193 Barcelona, Spain. jordi.garcia@irta.cat
Andrej Benjak
Walter Sanseverino
Michael Bourgeois
Gisela Mir
Víctor M González
Elizabeth Hénaff
Francisco Câmara
Luca Cozzuto
Ernesto Lowy
Tyler Alioto
Salvador Capella-Gutiérrez
Jose Blanca
Joaquín Cañizares
Pello Ziarsolo
Daniel Gonzalez-Ibeas
Luis Rodríguez-Moreno
Marcus Droege
Lei Du
Miguel Alvarez-Tejado
Belen Lorente-Galdos
Marta Melé
Luming Yang
Yiqun Weng
Arcadi Navarro
Tomas Marques-Bonet
Miguel A Aranda
Fernando Nuez
Belén Picó
Toni Gabaldón
Guglielmo Roma
Roderic Guigó
Josep M Casacuberta
Pere Arús
Pere Puigdomènech

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the genome sequence of melon, an important horticultural crop worldwide. We assembled 375 Mb of the double-haploid line DHL92, representing 83.3% of the estimated melon genome. We predicted 27,427 protein-coding genes, which we analyzed by reconstructing 22,218 phylogenetic trees, allowing mapping of the orthology and paralogy relationships of sequenced plant genomes. We observed the absence of recent whole-genome duplications in the melon lineage since the ancient eudicot triplication, and our data suggest that transposon amplification may in part explain the increased size of the melon genome compared with the close relative cucumber. A low number of nucleotide-binding site-leucine-rich repeat disease resistance genes were annotated, suggesting the existence of specific defense mechanisms in this species. The DHL92 genome was compared with that of its parental lines allowing the quantification of sequence variability in the species. The use of the genome sequence in future investigations will facilitate the understanding of evolution of cucurbits and the improvement of breeding strategies.

Indexed as

Biological EvolutionPhylogenyBase SequenceChromosome MappingChromosomes, Artificial, BacterialCucumis meloDisease ResistanceDNA Transposable ElementsGenes, DuplicateGenes, PlantGenome, PlantGenomicsLikelihood FunctionsModels, GeneticMolecular Sequence AnnotationMolecular Sequence DataDNA Transposable Elements

Identifiers

PMID22753475
PMCPMC3406823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.