Evidence map›Paper›PMID 22753090›Full record

ArticleHuman mutation2012

Associations among genotype, clinical phenotype, and intracellular localization of trafficking proteins in ARC syndrome.

Holly Smith, Romain Galmes, Ekaterina Gogolina, Anna Straatman-Iwanowska, Kim Reay, Blerida Banushi, Christopher K Bruce, Andrew R Cullinane, Rene Romero, Richard Chang and 14 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Human mutation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Two novel mutations in theWorld journal of clinical cases · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Two novel mutations inFrontiers in pediatrics · 2022
    Article
  10. Article
  11. A Novel Mutation ofCase reports in genetics · 2020
    Article
  12. A NovelPediatric gastroenterology, hepatology & nutrition · 2019
    Article
  13. Review
  14. A novel mutation inJIMD reports · 2019
    Article
  15. Article
  16. Article
  17. VPS33B and VIPAR are essential for epidermal lamellar body biogenesis and function.Biochimica et biophysica acta. Molecular basis of disease · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 17 institutions in 7 countries.

Holly SmithMedical and Molecular Genetics, School of Clinical and Experimental Medicine, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Romain Galmes
Ekaterina Gogolina
Anna Straatman-Iwanowska
Kim Reay
Blerida Banushi
Christopher K Bruce
Andrew R Cullinane
Rene Romero
Richard Chang
Oanez Ackermann
Clarisse Baumann
Hakan Cangul
Fatma Cakmak Celik
Canan Aygun
Richard Coward
Carlo Dionisi-Vici
Barbara Sibbles
Carol Inward
Chong Ae Kim
Judith Klumperman
A S Knisely
Steven P Watson
Paul Gissen
University College London · GBUniversity of Birmingham · GBBristol Royal Hospital for Children · GBOndokuz Mayıs University · TRUniversity Medical Center Utrecht · NLBambino Gesù Children's Hospital · ITBicêtre Hospital · FRBirmingham Women's Hospital · GBChildren's Center · USChildren's Hospital of Orange County · USErasmus MC · NLGreat Ormond Street Hospital · GBHôpital Robert-Debré · FRKing's College Hospital · GBMedical Research Council · GBNational Human Genome Research Institute · USUniversidade de São Paulo · BR

Funding

British Heart Foundation RG/09/007/27917Medical Research Council G0501901Wellcome Trust 095662
6 · The paper itself

Abstract

Arthrogryposis-renal dysfunction-cholestasis (ARC) syndrome is a rare autosomal recessive multisystem disorder caused by mutations in vacuolar protein sorting 33 homologue B (VPS33B) and VPS33B interacting protein, apical-basolateral polarity regulator (VIPAR). Cardinal features of ARC include congenital joint contractures, renal tubular dysfunction, cholestasis, severe failure to thrive, ichthyosis, and a defect in platelet alpha-granule biogenesis. Most patients with ARC do not survive past the first year of life. We report two patients presenting with a mild ARC phenotype, now 5.5 and 3.5 years old. Both patients were compound heterozygotes with the novel VPS33B donor splice-site mutation c.1225+5G>C in common. Immunoblotting and complementary DNA analysis suggest expression of a shorter VPS33B transcript, and cell-based assays show that c.1225+5G>C VPS33B mutant retains some ability to interact with VIPAR (and thus partial wild-type function). This study provides the first evidence of genotype-phenotype correlation in ARC and suggests that VPS33B c.1225+5G>C mutation predicts a mild ARC phenotype. We have established an interactive online database for ARC (https://grenada.lumc.nl/LOVD2/ARC) comprising all known variants in VPS33B and VIPAR. Also included in the database are 15 novel pathogenic variants in VPS33B and five in VIPAR.

Indexed as

Genetic Association StudiesArthrogryposisCarrier ProteinsChild, PreschoolCholestasisFemaleHEK293 CellsHeterozygoteHumansMaleModels, MolecularMolecular Diagnostic TechniquesProtein TransportRenal InsufficiencyRNA Splice SitesSequence Analysis, DNACarrier ProteinsRNA Splice SitesVesicular Transport ProteinsVIPAS39 protein, humanVPS33B protein, human

Identifiers

PMID22753090
PMCPMC3746110
OpenAlexW2145914833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.