Evidence map›Paper›PMID 22752873›Full record

ReviewProtein & cell2012

Minor fibrillar collagens, variable regions alternative splicing, intrinsic disorder, and tyrosine sulfation.

Ming Fang, Reed Jacob, Owen McDougal, Julia Thom Oxford

Open access · bronzeAbstract readReview
In one paragraph

Review in Protein & cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Collagen- and hyaluronic acid-based hydrogels and their biomedical applications.Materials science & engineering. R, Reports : a review journal · 2021
    Article
  3. Journal of developmental biology · 2020
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ming FangDepartment of Biological Sciences, Boise State University, Boise, ID 83725, USA.
Reed Jacob
Owen McDougal
Julia Thom Oxford
Boise State University · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Scott A Minnich · 2012 to 2026
$59.8M
UNDERGRADUATE COLLEGE OUTREACH PROGRAMP20RR016454 · NCRR · UNIVERSITY OF IDAHO · PI CHASE, JENNIFER R · 2001 to 2011
$35.3M
VPS35 D620N inhibits autophagy through disrupted hyaluronic acid-CD44 signalingP20GM109095 · NIGMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2014 to 2023
$22.7M
Type XI collagen isoforms in skeletal biologyR01AR047985 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2001 to 2005
$1.3M
Type XI collagen isoforms in skeletal biologyK02AR048672 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2002 to 2006
$376k
Regulation of cell signaling by Col11a1 during craniofacial development in the zeR15HD059949 · NICHD · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2009 to 2009
$212k
NCRR NIH HHS P20 RR016454NCRR NIH HHS P20RR16454NIAMS NIH HHS K02 AR048672NIAMS NIH HHS K02AR48672NIAMS NIH HHS R01 AR047985NIAMS NIH HHS R01AR47985NICHD NIH HHS R15 HD059949NICHD NIH HHS R15HD059949NIGMS NIH HHS P20 GM103408NIGMS NIH HHS P20 GM109095
6 · The paper itself

Abstract

Minor fibrillar collagen types V and XI, are those less abundant than the fibrillar collagen types I, II and III. The alpha chains share a high degree of similarity with respect to protein sequence in all domains except the variable region. Genomic variation and, in some cases, extensive alternative splicing contribute to the unique sequence characteristics of the variable region. While unique expression patterns in tissues exist, the functions and biological relevance of the variable regions have not been elucidated. In this review, we summarize the existing knowledge about expression patterns and biological functions of the collagen types V and XI alpha chains. Analysis of biochemical similarities among the peptides encoded by each exon of the variable region suggests the potential for a shared function. The alternative splicing, conservation of biochemical characteristics in light of low sequence conservation, and evidence for intrinsic disorder, suggest modulation of binding events between the surface of collagen fibrils and surrounding extracellular molecules as a shared function.

Indexed as

Alternative SplicingAnimalsFibrillar CollagensHumansSulfatesSurface PropertiesTyrosineFibrillar CollagensSulfatesTyrosinetyrosine O-sulfate

Identifiers

PMID22752873
PMCPMC3484837
OpenAlexW2063381655

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.