Evidence map›Paper›PMID 22752791›Full record

ArticleBiomolecular NMR assignments2013

Backbone ¹H, ¹³C, and ¹⁵N chemical shift assignment for HIV-1 protease subtypes and multi-drug resistant variant MDR 769.

Xi Huang, Ian Mitchelle S de Vera, Angelo M Veloro, James R Rocca, Carlos Simmerling, Ben M Dunn, Gail E Fanucci

Abstract read
In one paragraph

Article in Biomolecular NMR assignments, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xi HuangDepartment of Chemistry, University of Florida, PO Box 117200, Gainesville, FL 32611, USA.
Ian Mitchelle S de Vera
Angelo M Veloro
James R Rocca
Carlos Simmerling
Ben M Dunn
Gail E Fanucci
University of Florida · USStony Brook University · US

Funding

Human Immunodeficiency Virus ProteinaseR37AI028571 · NIAID · UNIVERSITY OF FLORIDA · PI DUNN, BEN M. · 2005 to 2014
$3.8M
HUMAN IMMUNODEFICIENCY VIRUS PROTEINASER01AI028571 · NIAID · UNIVERSITY OF FLORIDA · PI DUNN, BEN M. · 1989 to 2004
$1.3M
Elucidating Molecular Mechanisms of Drug Resistance in HIV-1 ProteaseR01GM105409 · NIGMS · UNIVERSITY OF FLORIDA · PI FANUCCI, GAIL E · 2013 to 2016
$1.1M
NIAID NIH HHS AI28571NIAID NIH HHS R01 AI028571NIAID NIH HHS R37 AI028571NIGMS NIH HHS R01 GM105409
6 · The paper itself

Abstract

HIV-1 protease (HIV-1PR) is an essential drug target in the treatment of patients infected with HIV-1. Mutations are found to arise in over 38 of 99 amino acid sites in this protein in response to drug therapy or natural selection, where many are found combinations that alter enzyme kinetics or inhibitor susceptibility without a clear structural mechanism. In efforts to understand how these mutations alter the flexibility and dynamics of HIV-1PR, we report the backbone (1)H, (13)C, and (15)N chemical shift assignments for subtypes C, circulating recombinant form CRF01_AE and a multi-drug resistant variant MDR 769. These assignments are essential for future work aimed at characterizing backbone dynamics, exchange dynamics and dynamics of protein/substrate or protein/inhibitor interactions.

Indexed as

Drug Resistance, MultipleDrug Resistance, ViralNuclear Magnetic Resonance, BiomolecularProtonsAmino Acid SequenceCarbon IsotopesHIV-1HIV ProteaseMolecular Sequence DataMutant ProteinsNitrogen IsotopesProtein Structure, SecondaryCarbon IsotopesHIV ProteaseMutant ProteinsNitrogen Isotopesp16 protease, Human immunodeficiency virus 1Protons

Identifiers

PMID22752791
PMCPMC3518686
OpenAlexW1985831435

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.