Evidence map›Paper›PMID 22752179›Full record

ArticleApplied and environmental microbiology2012

Genetic diversity, symbiotic evolution, and proposed infection process of Bradyrhizobium strains isolated from root nodules of Aeschynomene americana L. in Thailand.

Rujirek Noisangiam, Kamonluck Teamtisong, Panlada Tittabutr, Nantakorn Boonkerd, Uchiumi Toshiki, Kiwamu Minamisawa, Neung Teaumroong

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Type IV Secretion System (T4SS) Mediates Symbiosis betweenApplied and environmental microbiology · 2023
    Article
  7. Article
  8. Article
  9. Molecular Basis of Root Nodule Symbiosis betweenPlants (Basel, Switzerland) · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Applied and environmental microbiology · 2019
    Article
  15. The rhizobial type III effector ErnA confers the ability to form nodules in legumes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Article
  17. Regulation of Nitrogen Fixation inFrontiers in microbiology · 2018
    Article
  18. Article
  19. Article
  20. Specificity in Legume-Rhizobia Symbioses.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Rujirek NoisangiamInstitute of Agricultural Technology, School of Biotechnology, Suranaree University of Technology, Nakhon Ratchasima, Thailand.
Kamonluck Teamtisong
Panlada Tittabutr
Nantakorn Boonkerd
Uchiumi Toshiki
Kiwamu Minamisawa
Neung Teaumroong
Suranaree University of Technology · THKagoshima University · JPTohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diversity of bacteria nodulating Aeschynomene americana L. in Thailand was determined from phenotypic characteristics and multilocus sequence analysis of the 16S rRNA gene and 3 housekeeping genes (dnaK, recA, and glnB). The isolated strains were nonphotosynthetic bacteria and were assigned to the genus Bradyrhizobium, in which B. yuanmingense was the dominant species. Some of the other species, including B. japonicum, B. liaoningense, and B. canariense, were minor species. These isolated strains were divided into 2 groups-nod-containing and divergent nod-containing strains-based on Southern blot hybridization and PCR amplification of nodABC genes. The divergent nod genes could not be PCR amplified and failed to hybridize nod gene probes designed from B. japonicum USDA110, but hybridized to probes from other bradyrhizobial strains under low-stringency conditions. The grouping based on sequence similarity of nod genes was well correlated with the grouping based on that of nifH gene, in which the nod-containing and divergent nod-containing strains were obviously distinguished. The divergent nod-containing strains and photosynthetic bradyrhizobia shared close nifH sequence similarity and an ability to fix nitrogen in the free-living state. Surprisingly, the strains isolated from A. americana could nodulate Aeschynomene plants that belong to different cross-inoculation (CI) groups, including A. afraspera and A. indica. This is the first discovery of bradyrhizobia (nonphotosynthetic and nod-containing strain) originating from CI group 1 nodulating roots of A. indica (CI group 3). An infection process used to establish symbiosis on Aeschynomene different from the classical one is proposed.

Indexed as

Genetic VariationSymbiosisBacterial ProteinsBlotting, SouthernBradyrhizobiumCluster AnalysisDNA, BacterialDNA, RibosomalEvolution, MolecularFabaceaeMultilocus Sequence TypingPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SRoot Nodules, PlantThailandBacterial ProteinsDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID22752179
PMCPMC3416612
OpenAlexW2118649254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.