Evidence map›Paper›PMID 22750673›Full record

ArticleProtein expression and purification2012

Efficient stable isotope labeling and purification of vitamin D receptor from inclusion bodies.

Jinge Zhu, Hongyu Rao, Marco Tonelli, William M Westler, Kiran K Singarapu, John L Markley, Hector F DeLuca, Fariba M Assadi-Porter

Abstract read
In one paragraph

Article in Protein expression and purification, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jinge ZhuDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Hongyu Rao
Marco Tonelli
William M Westler
Kiran K Singarapu
John L Markley
Hector F DeLuca
Fariba M Assadi-Porter
University of Wisconsin–Madison · US

Funding

WATER DISTRIB:PHYSICAL PROPERT:PIZZA &LMPS MOZZARELLA CHEESES:EARLY STAGE MATURP41RR002301 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1985 to 2011
$13.0M
TR&D 3: TECHNOLOGY DEVELOPMENT FOR NMR STUDIES OF SMALL MOLECULES (METABOLOMICS, NATURAL PRODUCTS, METABOLITE-PROTEIN INTERACTIONS) pp.537-585 P41GM103399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2012 to 2019
$9.4M
The sweet protein brazzein and its interaction with the human taste receptorR01DC009018 · NIDCD · UNIVERSITY OF WISCONSIN-MADISON · PI ASSADI-PORTER, FARIBA M · 2008 to 2012
$1.6M
NCRR NIH HHS 5P41RR002301-27NCRR NIH HHS P41 RR002301NCRR NIH HHS RR02301-26S1NIDCD NIH HHS R01 DC009018NIGMS NIH HHS 8 P41 GM103399-27NIGMS NIH HHS P41 GM103399
6 · The paper itself

Abstract

Vitamin D receptor (VDR) plays a crucial role in many cellular processes including calcium and phosphate homeostasis. Previous purification methods from prokaryotic and eukaryotic expression systems were challenged by low protein solubility accompanied by multi purification steps resulting in poor protein recovery. The full-length VDR and its ligand binding domain (LBD) were mostly (>90%) insoluble even when expressed at low temperatures in the bacterial system. We describe a one-step procedure that results in the purification of rat VDR and LBD proteins in high-yield from Escherichia coli inclusion bodies. The heterologously expressed protein constructs retained full function as demonstrated by ligand binding and DNA binding assays. Furthermore, we describe an efficient strategy for labeling these proteins with (2)H, (13)C, and (15)N for structural and functional studies by nuclear magnetic resonance (NMR) spectroscopy. This efficient production system will facilitate future studies on the mechanism of vitamin D action including characterization of the large number of synthetic vitamin D analogs that have been developed.

Indexed as

AnimalsBinding SitesCloning, MolecularDeuteriumDNAEscherichia coliInclusion BodiesIsotope LabelingLigandsNuclear Magnetic Resonance, BiomolecularProtein FoldingProtein Structure, TertiaryRatsReceptors, CalcitriolRecombinant ProteinsSolubilityDeuteriumDNALigandsReceptors, CalcitriolRecombinant Proteins

Identifiers

PMID22750673
PMCPMC3432171
OpenAlexW1995012118

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.