ArticleBMC genomics2012
Computational identification and analysis of novel sugarcane microRNAs.
Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
33 citing papers in PubMed, 78 citations in OpenAlex.
- Research progress on plant noncoding RNAs in response to low-temperature stress.Plant signaling & behavior · 2022Review
- A short review on sugarcane: its domestication, molecular manipulations and future perspectives.Genetic resources and crop evolution · 2022Review
- Article
- Novel approaches to circumvent the devastating effects of pests on sugarcane.Scientific reports · 2021Article
- The Critical Role of Small RNAs in Regulating Plant Innate Immunity.Biomolecules · 2021Review
- Current breeding and genomic approaches to enhance the cane and sugar productivity under abiotic stress conditions.3 Biotech · 2020Review
- Newly identified miRNAs may contribute to aerenchyma formation in sugarcane roots.Plant direct · 2020Article
- MicroRNA156 amplifies transcription factor-associated cold stress tolerance in plant cells.Molecular genetics and genomics : MGG · 2019Article
- Review
- Article
- Roles of Non-Coding RNA in Sugarcane-Microbe Interaction.Non-coding RNA · 2017Article
- Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.).BMC genomics · 2017Article
- Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors.Functional & integrative genomics · 2017Article
- Small RNA sequencing reveals a role for sugarcane miRNAs and their targets in response to Sporisorium scitamineum infection.BMC genomics · 2017Article
- MicroRNAs and Their Regulatory Role in Sugarcane.Frontiers in plant science · 2017Review
- Defense-related proteins involved in sugarcane responses to biotic stress.Genetics and molecular biology · 2017Article
- Computational identification and comparative analysis of miRNA precursors in three palm species.Planta · 2016Article
- Identification and Characterization of Erysiphe necator-Responsive MicroRNAs in Chinese Wild Vitis pseudoreticulata by High-Throughput Sequencing.Frontiers in plant science · 2016Article
- MicroRNA from Moringa oleifera: Identification by High Throughput Sequencing and Their Potential Contribution to Plant Medicinal Value.PloS one · 2016Article
- Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.Genetics · 2015Article
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Authors and funding
9 authors at 4 institutions in 3 countries.
Funding
Abstract
backgroundMicroRNA-regulation of gene expression plays a key role in the development and response to biotic and abiotic stresses. Deep sequencing analyses accelerate the process of small RNA discovery in many plants and expand our understanding of miRNA-regulated processes. We therefore undertook small RNA sequencing of sugarcane miRNAs in order to understand their complexity and to explore their role in sugarcane biology.
resultsA bioinformatics search was carried out to discover novel miRNAs that can be regulated in sugarcane plants submitted to drought and salt stresses, and under pathogen infection. By means of the presence of miRNA precursors in the related sorghum genome, we identified 623 candidates of new mature miRNAs in sugarcane. Of these, 44 were classified as high confidence miRNAs. The biological function of the new miRNAs candidates was assessed by analyzing their putative targets. The set of bona fide sugarcane miRNA includes those likely targeting serine/threonine kinases, Myb and zinc finger proteins. Additionally, a MADS-box transcription factor and an RPP2B protein, which act in development and disease resistant processes, could be regulated by cleavage (21-nt-species) and DNA methylation (24-nt-species), respectively.
conclusionsA large scale investigation of sRNA in sugarcane using a computational approach has identified a substantial number of new miRNAs and provides detailed genotype-tissue-culture miRNA expression profiles. Comparative analysis between monocots was valuable to clarify aspects about conservation of miRNA and their targets in a plant whose genome has not yet been sequenced. Our findings contribute to knowledge of miRNA roles in regulatory pathways in the complex, polyploidy sugarcane genome.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.