Evidence map›Paper›PMID 22747837›Full record

ArticleBMC genomics2012

Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation.

Heather M Hines, Riccardo Papa, Mayte Ruiz, Alexie Papanicolaou, Charles Wang, H Frederik Nijhout, W Owen McMillan, Robert D Reed

Abstract read
In one paragraph

Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  8. Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Article
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  11. Single master regulatory gene coordinates the evolution and development of butterfly color and iridescence.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
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  16. Waiting in the wings: what can we learn about gene co-option from the diversification of butterfly wing patterns?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Heather M HinesDepartment of Genetics, North Carolina State University, Raleigh, NC 27695, USA. hmh19@psu.edu
Riccardo Papa
Mayte Ruiz
Alexie Papanicolaou
Charles Wang
H Frederik Nijhout
W Owen McMillan
Robert D Reed

Funding

NIGMS NIH HHS F32 GM889942
6 · The paper itself

Abstract

backgroundHeliconius butterfly wing pattern diversity offers a unique opportunity to investigate how natural genetic variation can drive the evolution of complex adaptive phenotypes. Positional cloning and candidate gene studies have identified a handful of regulatory and pigmentation genes implicated in Heliconius wing pattern variation, but little is known about the greater developmental networks within which these genes interact to pattern a wing. Here we took a large-scale transcriptomic approach to identify the network of genes involved in Heliconius wing pattern development and variation. This included applying over 140 transcriptome microarrays to assay gene expression in dissected wing pattern elements across a range of developmental stages and wing pattern morphs of Heliconius erato.

resultsWe identified a number of putative early prepattern genes with color-pattern related expression domains. We also identified 51 genes differentially expressed in association with natural color pattern variation. Of these, the previously identified color pattern "switch gene" optix was recovered as the first transcript to show color-specific differential expression. Most differentially expressed genes were transcribed late in pupal development and have roles in cuticle formation or pigment synthesis. These include previously undescribed transporter genes associated with ommochrome pigmentation. Furthermore, we observed upregulation of melanin-repressing genes such as ebony and Dat1 in non-melanic patterns.

conclusionsThis study identifies many new genes implicated in butterfly wing pattern development and provides a glimpse into the number and types of genes affected by variation in genes that drive color pattern evolution.

Indexed as

Gene Expression ProfilingAnimalsButterfliesEnzymesGenetic VariationGenomicsMelaninsPhenothiazinesPigmentationWings, AnimalEnzymesMelaninsommochromePhenothiazines

Identifiers

PMID22747837
PMCPMC3443447

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.