Evidence map›Paper›PMID 22747609›Full record

ArticleCancer science2012

Immunohistochemical analysis-based proteomic subclassification of newly diagnosed glioblastomas.

Kazuya Motomura, Atsushi Natsume, Reiko Watanabe, Ichiro Ito, Yukinari Kato, Hiroyuki Momota, Ryo Nishikawa, Kazuhiko Mishima, Yoko Nakasu, Tatsuya Abe and 6 more

Abstract read
In one paragraph

Article in Cancer science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  14. Glycosylation Changes in Brain Cancer.ACS chemical neuroscience · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kazuya MotomuraDepartment of Neurosurgery, Nagoya University School of Medicine, Japan.
Atsushi Natsume
Reiko Watanabe
Ichiro Ito
Yukinari Kato
Hiroyuki Momota
Ryo Nishikawa
Kazuhiko Mishima
Yoko Nakasu
Tatsuya Abe
Hiroki Namba
Yoichi Nakazato
Hiroshi Tashiro
Ichiro Takeuchi
Tsutomu Mori
Toshihiko Wakabayashi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent gene expression and copy number profilings of glioblastoma multiforme (GBM) by The Cancer Genome Atlas (TCGA) Research Network suggest the existence of distinct subtypes of this tumor. However, these approaches might not be easily applicable in routine clinical practice. In the current study, we aimed to establish a proteomics-based subclassification of GBM by integrating their genomic and epigenomic profiles. We subclassified 79 newly diagnosed GBM based on expression patterns determined by comprehensive immunohistochemical observation in combination with their DNA copy number and DNA methylation patterns. The clinical relevance of our classification was independently validated in TCGA datasets. Consensus clustering identified the four distinct GBM subtypes: Oligodendrocyte Precursor (OPC) type, Differentiated Oligodendrocyte (DOC) type, Astrocytic Mesenchymal (AsMes) type and Mixed type. The OPC type was characterized by highly positive scores of Olig2, PDGFRA, p16, p53 and synaptophysin. In contrast, the AsMes type was strongly associated with strong expressions of nestin, CD44 and podoplanin, with a high glial fibrillary acidic protein score. The median overall survival of OPC-type patients was significantly longer than that of the AsMes-type patients (19.9 vs 12.8 months). This finding was in agreement with the Oncomine analysis of TCGA datasets, which revealed that PDGFRA and Olig2 were favorable prognostic factors and podoplanin and CD44 were associated with a poor clinical outcome. This is the first study to establish a subclassification of GBM on the basis of immunohistochemical analysis. Our study will shed light on personalized therapies that might be feasible in daily neuropathological practice.

Indexed as

AdolescentAdultAgedAged, 80 and overBrain NeoplasmsCluster AnalysisFemaleGene Expression ProfilingGlioblastomaHumansImmunohistochemistryMaleMiddle AgedMultiplex Polymerase Chain ReactionProteomicsTranscriptome

Identifiers

PMID22747609
PMCPMC7659188

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.