Evidence map›Paper›PMID 22745169›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system.

Karin Walldén, Robert Williams, Jun Yan, Pei W Lian, Luchun Wang, Konstantinos Thalassinos, Elena V Orlova, Gabriel Waksman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
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  5. Membrane association and polar localization of theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Metabolic versatility ofFrontiers in microbiology · 2023
    Article
  9. Article
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  12. Review
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  17. Review
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  19. Review
  20. Functional and evolutionary analysis of viral proteins containing a Rossmann-like fold.Protein science : a publication of the Protein Society · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Karin WalldénInstitute of Structural and Molecular Biology, Department of Biological Sciences, Birkbeck, London WC1E 7HX, United Kingdom.
Robert Williams
Jun Yan
Pei W Lian
Luchun Wang
Konstantinos Thalassinos
Elena V Orlova
Gabriel Waksman

Funding

Wellcome TrustWellcome Trust 082227
6 · The paper itself

Abstract

Type IV secretion (T4S) systems mediate the transfer of proteins and DNA across the cell envelope of bacteria. These systems play important roles in bacterial pathogenesis and in horizontal transfer of antibiotic resistance. The VirB4 ATPase of the T4S system is essential for both the assembly of the system and substrate transfer. In this article, we present the crystal structure of the C-terminal domain of Thermoanaerobacter pseudethanolicus VirB4. This structure is strikingly similar to that of another T4S ATPase, VirD4, a protein that shares only 12% sequence identity with VirB4. The VirB4 domain purifies as a monomer, but the full-length protein is observed in a monomer-dimer equilibrium, even in the presence of nucleotides and DNAs. We also report the negative stain electron microscopy structure of the core complex of the T4S system of the Escherichia coli pKM101 plasmid, with VirB4 bound. In this structure, VirB4 is also monomeric and bound through its N-terminal domain to the core's VirB9 protein. Remarkably, VirB4 is observed bound to the side of the complex where it is ideally placed to play its known regulatory role in substrate transfer.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsBinding SitesCrystallizationCrystallography, X-RayDNA, BacterialEscherichia coliMacromolecular SubstancesMagnesiumMass SpectrometryMicroscopy, ElectronModels, BiologicalNucleotidesPlasmidsProtein BindingProtein ConformationAdenosine TriphosphatasesBacterial ProteinsDNA, BacterialMacromolecular SubstancesMagnesiumNucleotidesVirulence Factors

Identifiers

PMID22745169
PMCPMC3396474

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.