Evidence map›Paper›PMID 22745165›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Conserved features of intermediates in amyloid assembly determine their benign or toxic states.

Rajaraman Krishnan, Jessica L Goodman, Samrat Mukhopadhyay, Chris D Pacheco, Edward A Lemke, Ashok A Deniz, Susan Lindquist

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 132 citations in OpenAlex.

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  11. Single Molecule Characterization of Amyloid Oligomers.Molecules (Basel, Switzerland) · 2021
    Review
  12. Dynamics of oligomer and amyloid fibril formation by yeast prion Sup35 observed by high-speed atomic force microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rajaraman KrishnanWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Jessica L Goodman
Samrat Mukhopadhyay
Chris D Pacheco
Edward A Lemke
Ashok A Deniz
Susan Lindquist
Whitehead Institute for Biomedical Research · USScripps Research Institute · US

Funding

Single Molecule Studies of Protein Folding MechanismsR01GM066833 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DENIZ, ASHOK A · 2003 to 2017
$5.2M
THE FUNCTION OF HEAT SHOCK RESPONSE IN DROSOPHILAR01GM025874 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI WHITESELL, LUKE J · 1985 to 2016
$4.7M
CHAPERONE PROTEIN AND PROTEIN CONFORMATIONAL SWITCHESR37GM025874 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI LINDQUIST, SUSAN L. · 1997 to 2006
$2.7M
Investigating alpha-synuclein oligomer toxicity in synucleinopathies.F32NS067782 · NINDS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI GOODMAN, JESSICA LEIGH · 2010 to 2012
$113k
Howard Hughes Medical InstituteNIGMS NIH HHS GM025874NIGMS NIH HHS GM066833NIGMS NIH HHS R01 GM025874NIGMS NIH HHS R01 GM066833NIGMS NIH HHS R37 GM025874NINDS NIH HHS F32 NS067782NINDS NIH HHS F32 NS067782-02
6 · The paper itself

Abstract

Some amyloid-forming polypeptides are associated with devastating human diseases and others provide important biological functions. For both, oligomeric intermediates appear during amyloid assembly. Currently we have few tools for characterizing these conformationally labile intermediates and discerning what governs their benign versus toxic states. Here, we examine intermediates in the assembly of a normal, functional amyloid, the prion-determining region of yeast Sup35 (NM). During assembly, NM formed a variety of oligomers with different sizes and conformation-specific antibody reactivities. Earlier oligomers were less compact and reacted with the conformational antibody A11. More mature oligomers were more compact and reacted with conformational antibody OC. We found we could arrest NM in either of these two distinct oligomeric states with small molecules or crosslinking. The A11-reactive oligomers were more hydrophobic (as measured by Nile Red binding) and were highly toxic to neuronal cells, while OC-reactive oligomers were less hydrophobic and were not toxic. The A11 and OC antibodies were originally raised against oligomers of Aβ, an amyloidogenic peptide implicated in Alzheimer's disease (AD) that is completely unrelated to NM in sequence. Thus, this natural yeast prion samples two conformational states similar to those sampled by Aβ, and when assembly stalls at one of these two states, but not the other, it becomes extremely toxic. Our results have implications for selective pressures operating on the evolution of amyloid folds across a billion years of evolution. Understanding the features that govern such conformational transitions will shed light on human disease and evolution alike.

Indexed as

Alzheimer DiseaseAmyloidAnisotropyConserved SequenceDetergentsFluorescent DyesHumansKineticsModels, MolecularMolecular ConformationNeuronsPeptidesProtein ConformationProtein Structure, TertiarySpectrometry, FluorescenceTyrosineAmyloidDetergentsFluorescent DyesPeptidesTyrosine

Identifiers

PMID22745165
PMCPMC3396487
OpenAlexW2132430755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.