Evidence map›Paper›PMID 22742596›Full record

ArticleBiochemistry2012

The wciN gene encodes an α-1,3-galactosyltransferase involved in the biosynthesis of the capsule repeating unit of Streptococcus pneumoniae serotype 6B.

Weiqing Han, Li Cai, Baolin Wu, Lei Li, Zhongying Xiao, Jiansong Cheng, Peng G Wang

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Weiqing HanState Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin 300071, China.
Li Cai
Baolin Wu
Lei Li
Zhongying Xiao
Jiansong Cheng
Peng G Wang
Georgia State University · USNankai University · CNUniversity of South Carolina Salkehatchie · US

Funding

Biosynthesis of PolysaccharidesR01GM085267 · NIGMS · OHIO STATE UNIVERSITY · PI WANG, PENG GEORGE · 2009 to 2017
$2.4M
Investigation on Oligosaccharides as Antimicrobial and PrebioticsR01HD061935 · NICHD · OHIO STATE UNIVERSITY · PI WANG, PENG GEORGE · 2009 to 2013
$1.6M
Genetic Characterization of a Novel Model of Cleft PalateR03DE019451 · NIDCR · JACKSON LABORATORY · PI MURRAY, STEPHEN A · 2009 to 2010
$260k
NICHD NIH HHS R01 HD061935NIDCR NIH HHS R03 DE019451NIGMS NIH HHS R01 GM085267
6 · The paper itself

Abstract

Almost all Streptococcus pneumoniae (pneumococcus) capsule serotypes employ the Wzy-dependent pathway for their capsular polysaccharide (CPS) biosynthesis. The assembly of the CPS repeating unit (RU) is the first committed step in this pathway. The wciN gene was predicted to encode a galactosyltransferase involved in the RU assembly of pneumococcus type 6B CPS. Herein, we provide the unambiguous in vitro biochemical evidence that wciN encodes an α-1,3-galactosyltransferase catalyzing the transfer of galactosyl from UDP-Gal onto the Glcα-pyrophosphate-lipid (Glcα-PP-lipid) acceptor to form Galα(1-3)Glcα-PP-lipid. A chemically synthesized acceptor (Glcα-PP-O(CH(2))(10)CH(3)) was used to characterize the WciN activity. The disaccharide product, i.e., Galα(1-3)Glcα-PP-O(CH(2))(10)CH(3), was characterized by mass and NMR spectroscopy. Substrate specificity study indicated that the acceptor structural region composed of pyrophosphate and lipid moieties may play an important role in the enzyme-acceptor recognition. Furthermore, divalent metal cations were found indispensable to the WciN activity, suggesting that this glycosyltransferase (GT) belongs to the GT-A superfamily. By analyzing the activities of six WciN mutants, a DXD motif involved in the coordination of a divalent metal cation was identified. This work provides a chemical biology approach to characterize the activities of pneumococcal CPS GTs in vitro and will help to better understand the pneumococcal CPS biosynthetic pathway.

Indexed as

Amino Acid SequenceBacterial CapsulesCloning, MolecularGalactosyltransferasesGene ExpressionGenes, BacterialMagnesiumManganeseMolecular Sequence DataSequence AlignmentStreptococcus pneumoniaeSubstrate SpecificityZincGalactosyltransferasesMagnesiumManganeseN-acetyllactosaminide alpha-1,3-galactosyltransferaseZinc

Identifiers

PMID22742596
PMCPMC3422735
OpenAlexW1964485538

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.