Evidence map›Paper›PMID 22739495›Full record

ArticleThe ISME journal2012

Lake microbial communities are resilient after a whole-ecosystem disturbance.

Ashley Shade, Jordan S Read, Nicholas D Youngblut, Noah Fierer, Rob Knight, Timothy K Kratz, Noah R Lottig, Eric E Roden, Emily H Stanley, Jesse Stombaugh and 3 more

Abstract read
In one paragraph

Article in The ISME journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. A practical guide to characterising ecological coexistence.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
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  10. Resource diversity disturbs marineEcology and evolution · 2024
    Article
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  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ashley ShadeMicrobiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI 53706, USA.
Jordan S Read
Nicholas D Youngblut
Noah Fierer
Rob Knight
Timothy K Kratz
Noah R Lottig
Eric E Roden
Emily H Stanley
Jesse Stombaugh
Rachel J Whitaker
Chin H Wu
Katherine D McMahon

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Disturbances act as powerful structuring forces on ecosystems. To ask whether environmental microbial communities have capacity to recover after a large disturbance event, we conducted a whole-ecosystem manipulation, during which we imposed an intense disturbance on freshwater microbial communities by artificially mixing a temperate lake during peak summer thermal stratification. We employed environmental sensors and water chemistry analyses to evaluate the physical and chemical responses of the lake, and bar-coded 16S ribosomal RNA gene pyrosequencing and automated ribosomal intergenic spacer analysis (ARISA) to assess the bacterial community responses. The artificial mixing increased mean lake temperature from 14 to 20 °C for seven weeks after mixing ended, and exposed the microorganisms to very different environmental conditions, including increased hypolimnion oxygen and increased epilimnion carbon dioxide concentrations. Though overall ecosystem conditions remained altered (with hypolimnion temperatures elevated from 6 to 20 °C), bacterial communities returned to their pre-manipulation state as some environmental conditions, such as oxygen concentration, recovered. Recovery to pre-disturbance community composition and diversity was observed within 7 (epilimnion) and 11 (hypolimnion) days after mixing. Our results suggest that some microbial communities have capacity to recover after a major disturbance.

Indexed as

EcosystemWater MicrobiologyBacteriaBiotaLakesModels, StatisticalOxygenPhylogenyRNA, Ribosomal, 16SSeasonsSequence Analysis, DNATemperatureWaterOxygenRNA, Ribosomal, 16SWater

Identifiers

PMID22739495
PMCPMC3504957

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.