Evidence map›Paper›PMID 22738204›Full record

ArticleThe Plant journal : for cell and molecular biology2012

The Snf1-related protein kinases SnRK2.4 and SnRK2.10 are involved in maintenance of root system architecture during salt stress.

Fionn McLoughlin, Carlos S Galvan-Ampudia, Magdalena M Julkowska, Lotte Caarls, Dieuwertje van der Does, Christiane Laurière, Teun Munnik, Michel A Haring, Christa Testerink

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In one paragraph

Article in The Plant journal : for cell and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it, 206 citations in OpenAlex.

  1. Pooled it
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  7. Review
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  9. Review
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  19. Isolation and Functional Analysis ofInternational journal of molecular sciences · 2022
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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fionn McLoughlinUniversity of Amsterdam, Swammerdam Institute for Life Sciences, Section of Plant Physiology, Postbus 94215, 1090GE Amsterdam, The Netherlands.
Carlos S Galvan-Ampudia
Magdalena M Julkowska
Lotte Caarls
Dieuwertje van der Does
Christiane Laurière
Teun Munnik
Michel A Haring
Christa Testerink
University of Amsterdam · NLInstitut des Sciences du Végétal · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sucrose non-fermenting-1-related protein kinase 2 (SnRK2) family represents a unique family of plant-specific protein kinases implicated in cellular signalling in response to osmotic stress. In our studies, we observed that two class 1 SnRK2 kinases, SnRK2.4 and SnRK2.10, are rapidly and transiently activated in Arabidopsis roots after exposure to salt. Under saline conditions, snrk2.4 knockout mutants had a reduced primary root length, while snrk2.10 mutants exhibited a reduction in the number of lateral roots. The reduced lateral root density was found to be a combinatory effect of a decrease in the number of lateral root primordia and an increase in the number of arrested lateral root primordia. The phenotypes were in agreement with the observed expression patterns of genomic yellow fluorescent protein (YFP) fusions of SnRK2.10 and -2.4, under control of their native promoter sequences. SnRK2.10 was found to be expressed in the vascular tissue at the base of a developing lateral root, whereas SnRK2.4 was expressed throughout the root, with higher expression in the vascular system. Salt stress triggered a rapid re-localization of SnRK2.4-YFP from the cytosol to punctate structures in root epidermal cells. Differential centrifugation experiments of isolated Arabidopsis root proteins confirmed recruitment of endogenous SnRK2.4/2.10 to membranes upon exposure to salt, supporting their observed binding affinity for the phospholipid phosphatidic acid. Together, our results reveal a role for SnRK2.4 and -2.10 in root growth and architecture in saline conditions.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsGerminationHydroponicsModels, MolecularMutationOrgan SpecificityPhenotypePhosphatidic AcidsPhosphorylationPlant RootsPlants, Genetically ModifiedPlant Vascular BundleProtein BindingProtein KinasesArabidopsis ProteinsPhosphatidic AcidsProtein KinasesProtein Serine-Threonine KinasesSnRK2.10 protein, ArabidopsisSnRK2 protein, ArabidopsisSodium Chloride

Identifiers

PMID22738204
PMCPMC3533798
OpenAlexW2155900907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.