Evidence map›Paper›PMID 22736767›Full record

ArticleThe Journal of biological chemistry2012

Biochemical, genetic, and serological characterization of two capsule subtypes among Streptococcus pneumoniae Serotype 20 strains: discovery of a new pneumococcal serotype.

Juan J Calix, Richard J Porambo, Allison M Brady, Thomas R Larson, Janet Yother, Chitrananda Abeygunwardana, Moon H Nahm

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 1 pooled it
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 1 synthesis or guideline pooled it, 149 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Review
  7. Genome sequences of 36Microbiology resource announcements · 2024
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  10. Genomic analysis ofMicrobial genomics · 2023
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Juan J CalixDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Richard J Porambo
Allison M Brady
Thomas R Larson
Janet Yother
Chitrananda Abeygunwardana
Moon H Nahm
University of Alabama at Birmingham · USUnited States Military Academy · US

Funding

IMMUNOLOGIC DISEASES AND BASIC IMMUNOLOGYT32AI007051 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Laurie Ellen Harrington · 1985 to 2026
$13.1M
GENETICS &VIRULENCE OF PNEUMOCOCCAL CAPSULAR TYPESR01AI028457 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YOTHER, JANET L · 1989 to 2012
$3.2M
Impact of a new group 6 serotype on pneumococcal vaccinesR01AI031473 · NIAID · WASHINGTON UNIVERSITY · PI NAHM, MOON H. · 1991 to 2011
$1.7M
Pneumococcal capsule and host innate immunityR56AI031473 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NAHM, MOON H. · 2012 to 2012
$366k
The role of wcjE disruption in pneumococcal serotype 11A humoral escapeF31AI093103 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CALIX, JUAN JOSE · 2011 to 2013
$104k
NIAID NIH HHS AI007051NIAID NIH HHS AI-28457NIAID NIH HHS AI-31473NIAID NIH HHS AI-93103NIAID NIH HHS F31 AI093103NIAID NIH HHS R01 AI028457NIAID NIH HHS R01 AI031473NIAID NIH HHS R56 AI031473NIAID NIH HHS T32 AI007051
6 · The paper itself

Abstract

The bacterial pathogen Streptococcus pneumoniae expresses one of over 90 structurally distinct polysaccharide (PS) capsule serotypes. Prior PS structural analyses of the vaccine-associated serotype 20 do not agree with reports describing the genes that mediate capsule synthesis. Furthermore, using immunized human sera-based assays, serological differences were recently noted among strains typed as serotype 20. We examined the capsule structures of two serologically dissimilar serotype 20 strains, 20α and 20β, by extensive biochemical analysis. 20α PS was composed of the previously described serotype 20 hexasaccharide repeat unit, whereas the 20β PS was composed of a novel heptasaccharide repeat unit containing an extra branching α-glucose residue. Genetic analysis of the subtypes revealed that 20α may have arisen from a 20β progenitor following loss of function mutation to the glycosyltransferase gene whaF. Conventional serotyping methods using rabbit polyclonal or mouse monoclonal antibodies were unable to distinguish the subtypes. However, genetic analysis of multiple "serotype 20" clinical isolates revealed that all strains contain the 20β genotype. We propose naming bacteria that express the previously described 20α capsule structure 20A and bacteria that express the novel 20β capsule structure 20B, a new pneumococcal serotype.

Indexed as

AnimalsAntibodies, Monoclonal, Murine-DerivedBacterial CapsulesBacterial ProteinsGlycosyltransferasesHumansMiceMutationOligosaccharidesPolysaccharides, BacterialRabbitsSerotypingSpecies SpecificityStreptococcus pneumoniaeAntibodies, Monoclonal, Murine-DerivedBacterial ProteinsGlycosyltransferasesOligosaccharidesPolysaccharides, Bacterial

Identifiers

PMID22736767
PMCPMC3431705
OpenAlexW2092495308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.