Evidence map›Paper›PMID 22735388›Full record

ArticlePharmacogenetics and genomics2012

Functional analysis of human thromboxane synthase polymorphic variants.

Chung-Ying K Chen, Elizabeth M Poole, Cornelia M Ulrich, Richard J Kulmacz, Lee-Ho Wang

Abstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. The enzymology of the human prostanoid pathway.Molecular biology reports · 2020
    Review
  3. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Chung-Ying K ChenDepartment of Internal Medicine, University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.
Elizabeth M Poole
Cornelia M Ulrich
Richard J Kulmacz
Lee-Ho Wang
The University of Texas Health Science Center at Houston · USFred Hutch Cancer Center · USHarvard University · US

Funding

NSAID and COX/PG Metabolism and Colorectal CancerR01CA112516 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2005 to 2009
$3.6M
A Prospective Study of Colorectal Cancer: One-Carbon Metabolism and InflammationR01CA120523 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2008 to 2012
$3.0M
Prostaglandin Synthesis, Genetics and Colorectal CancerR01CA114467 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2006 to 2010
$2.7M
Thromboxane synthases-enzymology and gene regulationR01HL060625 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WANG, LEE-HO · 1998 to 2007
$1.5M
Genetic Study of Prostaglandin Synthesis/EGFR and Risk of Colorectal NeoplasiaR03CA123577 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ULRICH, CORNELIA M · 2006 to 2007
$170k
NCI NIH HHS CA114467NCI NIH HHS R01 CA112516NCI NIH HHS R01 CA114467NCI NIH HHS R01 CA120523NCI NIH HHS R03 CA123577NHLBI NIH HHS HL60625NHLBI NIH HHS R01 HL060625
6 · The paper itself

Abstract

backgroundThromboxane A synthase (TXAS) metabolizes the cyclooxygenase product prostaglandin (PG) H2 into thromboxane H2 (TXA2), a potent inducer of blood vessel constriction and platelet aggregation. Nonsynonymous polymorphisms in the TXAS gene have the potential to alter TXAS activity and affect TXA2 generation.

objectivesThe aim of this study was to assess the functional effects of genetic variants in the TXAS protein, including K258E, L357V, Q417E, E450K, and T451N.

methodsWild-type TXAS and the variant proteins were expressed in a bacterial system and purified by affinity and hydroxyapatite chromatography. The two characteristic catalytic activities of TXAS were assayed in each of the purified recombinant proteins: isomerization of PGH2 to TXA2 and fragmentation of PGH2 to 12-hydroxyheptadecatrienoic acid and malondialdehyde.

resultsAll of the variants showed both isomerization and fragmentation activities. The Km values of the variants ranged from 27 to 52 µmol/l PGH2 (wild-type value: 32 μmol/l PGH2); the Vmax values of the variants ranged from 18 to 40 U/mg (wild-type value: 41 U/mg). The kinetic differences were largest for the L357V variant, whose Vmax/Km ratio was just 27% of the wild-type value.

conclusionThe increased Km and decreased Vmax values observed with L357V suggest that this variant may generate less TXA2 at the low levels of PGH2 expected in vivo, raising the possibility of attenuated signaling through the thromboxane pathway.

Indexed as

BiocatalysisElectrophoresis, Polyacrylamide GelHumansKineticsModels, MolecularMutant ProteinsPolymorphism, Single NucleotideProstaglandin H2Thromboxane-A SynthaseThromboxane B2Mutant ProteinsProstaglandin H2Thromboxane-A SynthaseThromboxane B2

Identifiers

PMID22735388
PMCPMC4434599
OpenAlexW2318372276

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.