Evidence map›Paper›PMID 22730331›Full record

ArticleThe Journal of biological chemistry2012

Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.

Minghua Nie, Aaron Aslanian, John Prudden, Johanna Heideker, Ajay A Vashisht, James A Wohlschlegel, John R Yates, Michael N Boddy

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Article
  3. Solo or in Concert: SUMOylation in Pathogenic Fungi.The plant pathology journal · 2025
    Review
  4. The SUMO Pathway.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. SUMO: A Swiss Army Knife for Eukaryotic Topoisomerases.Frontiers in molecular biosciences · 2022
    Review
  15. Article
  16. USP7 and VCPCell reports · 2021
    Article
  17. Article
  18. Coordinating DNA Replication and Mitosis through Ubiquitin/SUMO and CDK1.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Minghua NieDepartment of Molecular Biology, The Scripps Research Institute, La, Jolla, CA 92037, USA.
Aaron Aslanian
John Prudden
Johanna Heideker
Ajay A Vashisht
James A Wohlschlegel
John R Yates
Michael N Boddy
Scripps Research Institute · USUniversity of California, Los Angeles · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Studies of the Rad60-Smc5-Smc6 DNA Repair ComplexR01GM068608 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BODDY, MICHAEL N · 2003 to 2020
$6.2M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
SUMO-dependent Regulation of Ubiquitin Ligases in Genomic StabilityR01GM081840 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BODDY, MICHAEL N · 2009 to 2018
$3.0M
Crosstalk between the ubiquitin and SUMO pathways in genome stabilityF32GM093600 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI NIE, MINGHUA DE HOFF · 2011 to 2012
$109k
NCRR NIH HHS P41 RR011823NIGMS NIH HHS F32 GM093600NIGMS NIH HHS GM068608NIGMS NIH HHS GM081840NIGMS NIH HHS GM093600NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM068608NIGMS NIH HHS R01 GM081840NIGMS NIH HHS R01 GM089778
6 · The paper itself

Abstract

Protein modification by SUMO and ubiquitin critically impacts genome stability via effectors that "read" their signals using SUMO interaction motifs or ubiquitin binding domains, respectively. A novel mixed SUMO and ubiquitin signal is generated by the SUMO-targeted ubiquitin ligase (STUbL), which ubiquitylates SUMO conjugates. Herein, we determine that the "ubiquitin-selective" segregase Cdc48-Ufd1-Npl4 also binds SUMO via a SUMO interaction motif in Ufd1 and can thus act as a selective receptor for STUbL targets. Indeed, we define key cooperative DNA repair functions for Cdc48-Ufd1-Npl4 and STUbL, thereby revealing a new signaling mechanism involving dual recruitment by SUMO and ubiquitin for Cdc48-Ufd1-Npl4 functions in maintaining genome stability.

Indexed as

Adenosine TriphosphatasesAmino Acid MotifsCarrier ProteinsCell Cycle ProteinsDNA, FungalDNA RepairGenomic InstabilityProtein BindingSchizosaccharomycesSchizosaccharomyces pombe ProteinsSignal TransductionSUMO-1 ProteinUbiquitinUbiquitinationUbiquitin-Protein LigasesValosin Containing ProteinAdenosine TriphosphatasesCarrier ProteinsCell Cycle ProteinsDNA, FungalNpl4 protein, S pombeSchizosaccharomyces pombe ProteinsSUMO-1 ProteinUbiquitinUbiquitin-Protein LigasesUfd1 protein, S pombeValosin Containing Protein

Identifiers

PMID22730331
PMCPMC3436128
OpenAlexW1579340161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.