Evidence map›Paper›PMID 22730300›Full record

ArticleNucleic acids research2012

The N-terminus of the human RecQL4 helicase is a homeodomain-like DNA interaction motif.

Oliver Ohlenschläger, Anja Kuhnert, Annerose Schneider, Sebastian Haumann, Peter Bellstedt, Heidi Keller, Hans-Peter Saluz, Peter Hortschansky, Frank Hänel, Frank Grosse and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. A Chinese patient with Rothmund-Thomson syndrome.Molecular genetics & genomic medicine · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Molecular Mechanisms of the RECQ4 Pathogenic Mutations.Frontiers in molecular biosciences · 2021
    Review
  9. Article
  10. Article
  11. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Oliver OhlenschlägerResearch Group Biomolecular NMR Spectroscopy, Leibniz Institute for Age Research-Fritz Lipmann Institute, Beutenbergstr. 11, Jena, Germany.
Anja Kuhnert
Annerose Schneider
Sebastian Haumann
Peter Bellstedt
Heidi Keller
Hans-Peter Saluz
Peter Hortschansky
Frank Hänel
Frank Grosse
Matthias Görlach
Helmut Pospiech
University of Oulu · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RecQL4 helicase is involved in the maintenance of genome integrity and DNA replication. Mutations in the human RecQL4 gene cause the Rothmund-Thomson, RAPADILINO and Baller-Gerold syndromes. Mouse models and experiments in human and Xenopus have proven the N-terminal part of RecQL4 to be vital for cell growth. We have identified the first 54 amino acids of RecQL4 (RecQL4_N54) as the minimum interaction region with human TopBP1. The solution structure of RecQL4_N54 was determined by heteronuclear liquid-state nuclear magnetic resonance (NMR) spectroscopy (PDB 2KMU; backbone root-mean-square deviation 0.73 Å). Despite low-sequence homology, the well-defined structure carries an overall helical fold similar to homeodomain DNA-binding proteins but lacks their archetypical, minor groove-binding N-terminal extension. Sequence comparison indicates that this N-terminal homeodomain-like fold is a common hallmark of metazoan RecQL4 and yeast Sld2 DNA replication initiation factors. RecQL4_N54 binds DNA without noticeable sequence specificity yet with apparent preference for branched over double-stranded (ds) or single-stranded (ss) DNA. NMR chemical shift perturbation observed upon titration with Y-shaped, ssDNA and dsDNA shows a major contribution of helix α3 to DNA binding, and additional arginine side chain interactions for the ss and Y-shaped DNA.

Indexed as

Amino Acid SequenceCarrier ProteinsDNADNA-Binding ProteinsDNA, Single-StrandedHomeodomain ProteinsHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularNuclear ProteinsProtein Interaction Domains and MotifsRecQ HelicasesSequence AlignmentCarrier ProteinsDNADNA-Binding ProteinsDNA, Single-StrandedHomeodomain ProteinsNuclear ProteinsRecQ HelicasesRECQL4 protein, humanTOPBP1 protein, human

Identifiers

PMID22730300
PMCPMC3458545
OpenAlexW2143707569

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.