Evidence map›Paper›PMID 22730122›Full record

ArticleJournal of bacteriology2012

Borrelia burgdorferi cp32 BpaB modulates expression of the prophage NucP nuclease and SsbP single-stranded DNA-binding protein.

Alicia M Chenail, Brandon L Jutras, Claire A Adams, Logan H Burns, Amy Bowman, Ashutosh Verma, Brian Stevenson

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Virulence Regulation inMicroorganisms · 2025
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
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  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alicia M ChenailDepartment of Microbiology, Immunology, and Molecular Genetics, University of Kentucky College of Medicine, Lexington, Kentucky, USA.
Brandon L Jutras
Claire A Adams
Logan H Burns
Amy Bowman
Ashutosh Verma
Brian Stevenson
University of Kentucky · US

Funding

ANALYSIS OF BORRELIA BURGDORFERI ERP PROTEINSR01AI044254 · NIAID · UNIVERSITY OF KENTUCKY · PI STEVENSON, BRIAN · 2000 to 2010
$3.1M
NIAID NIH HHS R01 AI044254NIAID NIH HHS R01-AI044254
6 · The paper itself

Abstract

The Borrelia burgdorferi BpaB proteins of the spirochete's ubiquitous cp32 prophages are DNA-binding proteins, required both for maintenance of the bacteriophage episomes and for transcriptional regulation of the cp32 erp operons. Through use of DNase I footprinting, we demonstrate that BpaB binds the erp operator initially at the sequence 5'-TTATA-3'. Electrophoretic mobility shift assays indicated that BpaB also binds with high affinity to sites located in the 5' noncoding regions of two additional cp32 genes. Characterization of the proteins encoded by those genes indicated that they are a single-stranded DNA-binding protein and a nuclease, which we named SsbP and NucP, respectively. Chromatin immunoprecipitation indicated that BpaB binds erp, ssbP, and nucP in live B. burgdorferi. A mutant bacterium that overexpressed BpaB produced significantly higher levels of ssbP and nucP transcript than did the wild-type parent.

Indexed as

Bacterial ProteinsBase SequenceBinding SitesBorrelia burgdorferiChromatin ImmunoprecipitationDeoxyribonucleasesDNA-Binding ProteinsDNA FootprintingMolecular Sequence DataOperator Regions, GeneticProphagesProtein BindingRepliconTranscription, GeneticBacterial ProteinsDeoxyribonucleasesDNA-Binding Proteins

Identifiers

PMID22730122
PMCPMC3415502
OpenAlexW2148401983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.