ArticleMolecular biology reports2012
The MicroRNAs and their targets in the channel catfish (Ictalurus punctatus).
Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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9 citing papers in PubMed.
- Bioinformatic prediction, annotation and experimental validation of conserved microRNAs in Lactuca sativa Linn.Scientific reports · 2025Article
- Identification and Characterization of Osmoregulation Related MicroRNAs in Gills of Hybrid Tilapia Under Three Types of Osmotic Stress.Frontiers in genetics · 2021Article
- Inventory of European Sea Bass (Frontiers in genetics · 2019Article
- A Review of Molecular Responses of Catfish to Bacterial Diseases and Abiotic Stresses.Frontiers in physiology · 2018Review
- In-silico based identification and functional analyses of miRNAs and their targets in Cowpea (AIMS genetics · 2017Article
- Profiling and characterization of eggplant (Solanum melongena L.) microRNAs and their targets.Molecular biology reports · 2014Article
- Article
- Structural and functional based identification of the bean (Phaseolus) microRNAs and their targets from expressed sequence tags.Journal of structural and functional genomics · 2013Article
- Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology.PloS one · 2013Article
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1 author.
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Abstract
MicroRNAs (miRNAs) are small, non-coding and negative regulatory RNAs about 22 nucleotides. They are mostly conserved among the organisms and this conservation makes them a good source for the identification of novel miRNAs by computational genomic homology. The miRNA repertoire of the major aquaculture species, channel catfish (Ictalurus punctatus), is unknown. This study is focused on computational search for novel miRNA homologs and their targets along with their characterization in channel catfish. Total 60 novel precursor miRNAs having 73 mature sequences belong to 45 families in channel catfish were identified and characterized. They belong to the miRNA families; ipu-let-7, miR-7, 10, 16, 24, 29, 32, 93, 99, 101, 105, 126, 127, 133, 135, 141, 142, 143, 144 145, 148, 150, 152, 153, 203, 210, 214, 221, 223, 293, 429, 430, 466, 682, 731, 737, 1388, 1594, 1642, 1701, 1782, 1814, 2145, 2182 and 3074 are reported for the first time in channel catfish. All the 73 mature miRNAs are observed in the stem portion of the stable minimum free energy stem-loop structures. Total 341 proteins targeted by the novel channel catfish miRNAs were also identified. They are involved in immune-related (32 %), signaling (15 %), transcription factors (15 %), metabolism (12 %), transportation (8 %), growth & development (5 %), structural (5 %) and others (8 %) proteins.
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