ReviewProtein & cell2012
Proteome-wide prediction of protein-protein interactions from high-throughput data.
Review in Protein & cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- Review
- Computational Network Inference for Bacterial Interactomics.mSystems · 2022Review
- In silico characterization, docking, and simulations to understand host-pathogen interactions in an effort to enhance crop production in date palms.Journal of molecular modeling · 2021Article
- Nerve Injury-Induced Neuronal PAP-I Maintains Neuropathic Pain by Activating Spinal Microglia.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020Article
- The translational network for metabolic disease - from protein interaction to disease co-occurrence.BMC bioinformatics · 2019Article
- A Cross-Linking-Aided Immunoprecipitation/Mass Spectrometry Workflow Reveals Extensive Intracellular Trafficking in Time-Resolved, Signal-Dependent Epidermal Growth Factor Receptor Proteome.Journal of proteome research · 2019Article
- Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory.Scientific reports · 2019Article
- Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information.Frontiers in genetics · 2018Article
- SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome.BMC bioinformatics · 2017Article
- TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.Bioinformatics (Oxford, England) · 2017Article
- SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations.International journal of molecular sciences · 2016Article
- The biochemical and mass spectrometric profiling of the dystrophin complexome from skeletal muscle.Computational and structural biotechnology journal · 2016Review
- Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs.BMC bioinformatics · 2015Article
- Reverse Engineering of Genome-wide Gene Regulatory Networks from Gene Expression Data.Current genomics · 2015Article
- Using network clustering to predict copy number variations associated with health disparities.PeerJ · 2015Article
- Protein-protein interaction network of the marine microalga Tetraselmis subcordiformis: prediction and application for starch metabolism analysis.Journal of industrial microbiology & biotechnology · 2014Article
- Structural bioinformatics of the interactome.Annual review of biophysics · 2014Review
- Protein-Protein Interactions as New Targets for Ion Channel Drug Discovery.Austin journal of pharmacology and therapeutics · 2013Article
- Protein-protein interaction networks: probing disease mechanisms using model systems.Genome medicine · 2013Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this paper, we present a brief review of the existing computational methods for predicting proteome-wide protein-protein interaction networks from high-throughput data. The availability of various types of omics data provides great opportunity and also unprecedented challenge to infer the interactome in cells. Reconstructing the interactome or interaction network is a crucial step for studying the functional relationship among proteins and the involved biological processes. The protein interaction network will provide valuable resources and alternatives to decipher the mechanisms of these functionally interacting elements as well as the running system of cellular operations. In this paper, we describe the main steps of predicting protein-protein interaction networks and categorize the available approaches to couple the physical and functional linkages. The future topics and the analyses beyond prediction are also discussed and concluded.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.