Evidence map›Paper›PMID 22729083›Full record

ArticleNature cell biology2012

Diverse epigenetic strategies interact to control epidermal differentiation.

Klaas W Mulder, Xin Wang, Carles Escriu, Yoko Ito, Roland F Schwarz, Jesse Gillis, Gábor Sirokmány, Giacomo Donati, Santiago Uribe-Lewis, Paul Pavlidis and 3 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 152 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Chromatin Landscape Governing Murine Epidermal Differentiation.The Journal of investigative dermatology · 2023
    Article
  8. Tctp, a unique Ing5-binding partner, inhibits the chromatin binding of Enok inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
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  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Klaas W MulderEpithelial Cell Biology Group, Cancer Research UK Cambridge Research Institute, Robinson Way, Cambridge CB2 0RE, UK. klaas.mulder@cancer.org.uk
Xin Wang
Carles Escriu
Yoko Ito
Roland F Schwarz
Jesse Gillis
Gábor Sirokmány
Giacomo Donati
Santiago Uribe-Lewis
Paul Pavlidis
Adele Murrell
Florian Markowetz
Fiona M Watt
Cancer Research UK · GBBC Centre for Disease Control · CAWellcome/MRC Cambridge Stem Cell Institute · GB

Funding

Neuroinformatics for gene expression: networks, function and meta-analysisR01GM076990 · NIGMS · UNIVERSITY OF BRITISH COLUMBIA · PI BIROL, INANC, PAVLIDIS, PAUL · 2005 to 2014
$2.0M
Cancer Research UKWellcome Trust 079249
6 · The paper itself

Abstract

It is becoming clear that interconnected functional gene networks, rather than individual genes, govern stem cell self-renewal and differentiation. To identify epigenetic factors that impact on human epidermal stem cells we performed siRNA-based genetic screens for 332 chromatin modifiers. We developed a Bayesian mixture model to predict putative functional interactions between epigenetic modifiers that regulate differentiation. We discovered a network of genetic interactions involving EZH2, UHRF1 (both known to regulate epidermal self-renewal), ING5 (a MORF complex component), BPTF and SMARCA5 (NURF complex components). Genome-wide localization and global mRNA expression analysis revealed that these factors impact two distinct but functionally related gene sets, including integrin extracellular matrix receptors that mediate anchorage of epidermal stem cells to their niche. Using a competitive epidermal reconstitution assay we confirmed that ING5, BPTF, SMARCA5, EZH2 and UHRF1 control differentiation under physiological conditions. Thus, regulation of distinct gene expression programs through the interplay between diverse epigenetic strategies protects epidermal stem cells from differentiation.

Indexed as

Epidermal CellsEpigenesis, GeneticGene Regulatory NetworksAdenosine TriphosphatasesAntigens, NuclearBayes TheoremBromodomain Containing ProteinsCCAAT-Enhancer-Binding ProteinsCell AdhesionCell DifferentiationCells, CulturedChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneCluster AnalysisDNA-Binding ProteinsEnhancer of Zeste Homolog 2 ProteinAdenosine TriphosphatasesAntigens, NuclearBromodomain Containing ProteinsCCAAT-Enhancer-Binding ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanfetal Alzheimer antigenING5 protein, humanIntegrinsMultiprotein ComplexesNerve Tissue ProteinsPolycomb Repressive Complex 2RNA, MessengerSMARCA5 protein, humanTranscription FactorsTumor Suppressor ProteinsUbiquitin-Protein LigasesUHRF1 protein, human

Identifiers

PMID22729083
OpenAlexW2038733266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.