Evidence map›Paper›PMID 22724039›Full record

ArticlePLoS neglected tropical diseases2012

Transcript expression analysis of putative Trypanosoma brucei GPI-anchored surface proteins during development in the tsetse and mammalian hosts.

Amy F Savage, Gustavo C Cerqueira, Sandesh Regmi, Yineng Wu, Najib M El Sayed, Serap Aksoy

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Single-cell RNA sequencing ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. A cell-surface phylome for African trypanosomes.PLoS neglected tropical diseases · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Amy F SavageDivision of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, USA.
Gustavo C Cerqueira
Sandesh Regmi
Yineng Wu
Najib M El Sayed
Serap Aksoy
Yale University · USUniversity of Maryland, College Park · US

Funding

Molecular Aspects of Tsetse and Trypanosome TransmissionR01AI051584 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2003 to 2013
$4.3M
Training in Parasitology and Vector BiologyT32AI007404 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1991 to 2017
$3.8M
AFRICAN TRYPANOSOME GENOME SEQUENCINGU01AI043062 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 2000 to 2003
$2.5M
Tsetse-Trypanosome InteractionsR21AI076879 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2008 to 2009
$454k
AFRICAN TRYPANOSOME GENOME SEQUENCINGR01AI043062 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 1998 to 1999
–
NIAID NIH HHS 2T32AI007404NIAID NIH HHS AI076879NIAID NIH HHS R01 AI043062NIAID NIH HHS R01 AI051584NIAID NIH HHS R21 AI076879NIAID NIH HHS T32 AI007404NIAID NIH HHS U01 AI043062PHS HHS T01/CCT122306-03
6 · The paper itself

Abstract

Human African Trypanosomiasis is a devastating disease caused by the parasite Trypanosoma brucei. Trypanosomes live extracellularly in both the tsetse fly and the mammal. Trypanosome surface proteins can directly interact with the host environment, allowing parasites to effectively establish and maintain infections. Glycosylphosphatidylinositol (GPI) anchoring is a common posttranslational modification associated with eukaryotic surface proteins. In T. brucei, three GPI-anchored major surface proteins have been identified: variant surface glycoproteins (VSGs), procyclic acidic repetitive protein (PARP or procyclins), and brucei alanine rich proteins (BARP). The objective of this study was to select genes encoding predicted GPI-anchored proteins with unknown function(s) from the T. brucei genome and characterize the expression profile of a subset during cyclical development in the tsetse and mammalian hosts. An initial in silico screen of putative T. brucei proteins by Big PI algorithm identified 163 predicted GPI-anchored proteins, 106 of which had no known functions. Application of a second GPI-anchor prediction algorithm (FragAnchor), signal peptide and trans-membrane domain prediction software resulted in the identification of 25 putative hypothetical proteins. Eighty-one gene products with hypothetical functions were analyzed for stage-regulated expression using semi-quantitative RT-PCR. The expression of most of these genes were found to be upregulated in trypanosomes infecting tsetse salivary gland and proventriculus tissues, and 38% were specifically expressed only by parasites infecting salivary gland tissues. Transcripts for all of the genes specifically expressed in salivary glands were also detected in mammalian infective metacyclic trypomastigotes, suggesting a possible role for these putative proteins in invasion and/or establishment processes in the mammalian host. These results represent the first large-scale report of the differential expression of unknown genes encoding predicted T. brucei surface proteins during the complete developmental cycle. This knowledge may form the foundation for the development of future novel transmission blocking strategies against metacyclic parasites.

Indexed as

Gene Expression ProfilingAnimalsComputational BiologyGastrointestinal TractGPI-Linked ProteinsHumansMaleMembrane ProteinsProtozoan ProteinsReal-Time Polymerase Chain ReactionSalivary GlandsTrypanosoma brucei bruceiTrypanosomiasis, AfricanTsetse FliesGPI-Linked ProteinsMembrane ProteinsProtozoan Proteins

Identifiers

PMID22724039
PMCPMC3378594
OpenAlexW2093854848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.