Evidence map›Paper›PMID 22723858›Full record

ArticlePloS one2012

Three new alpha1-antitrypsin deficiency variants help to define a C-terminal region regulating conformational change and polymerization.

Anna M Fra, Bibek Gooptu, Ilaria Ferrarotti, Elena Miranda, Roberta Scabini, Riccardo Ronzoni, Federica Benini, Luciano Corda, Daniela Medicina, Maurizio Luisetti and 1 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

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  13. The structural basis for Z αScience advances · 2020
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  19. Article
  20. Identification of a novel alpha1-antitrypsin variant.Respiratory medicine case reports · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Anna M FraDepartment of Biomedical Sciences and Biotechnology, University of Brescia, Brescia, Italy. fra@med.unibs.it
Bibek Gooptu
Ilaria Ferrarotti
Elena Miranda
Roberta Scabini
Riccardo Ronzoni
Federica Benini
Luciano Corda
Daniela Medicina
Maurizio Luisetti
Luisa Schiaffonati
Azienda Socio Sanitaria Territoriale degli Spedali Civili di Brescia · ITUniversity of Pavia · ITUniversity of Brescia · ITBirkbeck, University of London · GBBrescia University · USSapienza University of Rome · IT

Funding

Wellcome Trust
6 · The paper itself

Abstract

Alpha1-antitrypsin (AAT) deficiency is a hereditary disorder associated with reduced AAT plasma levels, predisposing adults to pulmonary emphysema. The most common genetic AAT variants found in patients are the mildly deficient S and the severely deficient Z alleles, but several other pathogenic rare alleles have been reported. While the plasma AAT deficiency is a common trait of the disease, only a few AAT variants, including the prototypic Z AAT and some rare variants, form cytotoxic polymers in the endoplasmic reticulum of hepatocytes and predispose to liver disease. Here we report the identification of three new rare AAT variants associated to reduced plasma levels and characterize their molecular behaviour in cellular models. The variants, called Mpisa (Lys259Ile), Etaurisano (Lys368Glu) and Yorzinuovi (Pro391His), showed reduced secretion compared to control M AAT, and accumulated to different extents in the cells as ordered polymeric structures resembling those formed by the Z variant. Structural analysis of the mutations showed that they may facilitate polymerization both by loosening 'latch' interactions constraining the AAT reactive loop and through effects on core packing. In conclusion, the new AAT deficiency variants, besides increasing the risk of lung disease, may predispose to liver disease, particularly if associated with the common Z variant. The new mutations cluster structurally, thus defining a region of the AAT molecule critical for regulating its conformational state.

Indexed as

AdultAllelesalpha 1-Antitrypsinalpha 1-Antitrypsin DeficiencyAmino Acid SequenceAnimalsCell Line, TumorChlorocebus aethiopsCOS CellsGenotypeHumansMaleMiddle AgedModels, MolecularMolecular Sequence DataMutationalpha 1-AntitrypsinProtein Isoforms

Identifiers

PMID22723858
PMCPMC3377647
OpenAlexW2137844933

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.