Evidence map›Paper›PMID 22723488›Full record

ArticleThe Journal of experimental biology2012

Differential expression of genes and proteins between electric organ and skeletal muscle in the mormyrid electric fish Brienomyrus brachyistius.

Jason R Gallant, Carl D Hopkins, David L Deitcher

Open access · greenAbstract read
In one paragraph

Article in The Journal of experimental biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

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  11. Electric organ discharge diversification in mormyrid weakly electric fish is associated with differential expression of voltage-gated ion channel genes.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2017
    Article
  12. Article
  13. Comparative histology of the adult electric organ among four species of the genus Campylomormyrus (Teleostei: Mormyridae).Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2015
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jason R GallantDepartment of Neurobiology and Behavior, Cornell University, Ithaca, NY, USA. jrg1@bu.edu
Carl D Hopkins
David L Deitcher
Cornell University · US

Funding

CELLULAR AND MOLECULAR NEUROBIOLOGYT32GM007469 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HARRIS-WARRICK, RONALD M · 1985 to 2011
$2.5M
TEMPORAL CODING AND COMMUNICATIONR01DC006206 · NIDCD · CORNELL UNIVERSITY ITHACA · PI HOPKINS, CARL DOUGLAS · 2003 to 2007
$1.7M
AN INTEGRATIVE APPROACH TO NEUROBIOLOGY AND BEHAVIORT32MH015793 · NIMH · CORNELL UNIVERSITY ITHACA · PI HOPKINS, CARL DOUGLAS · 1985 to 2007
$1.2M
NIDCD NIH HHS R01 DC006206NIDCD NIH HHS R01-DC6206NIGMS NIH HHS T32 GM007469NIGMS NIH HHS TG 2T32GM007469NIMH NIH HHS T32 MH015793NIMH NIH HHS TG T32-MH015793
6 · The paper itself

Abstract

Electric organs (EOs) have evolved independently in vertebrates six times from skeletal muscle (SM). The transcriptional changes accompanying this developmental transformation are not presently well understood. Mormyrids and gymnotiforms are two highly convergent groups of weakly electric fish that have independently evolved EOs: while much is known about development and gene expression in gymnotiforms, very little is known about development and gene expression in mormyrids. This lack of data limits prospects for comparative work. We report here on the characterization of 28 differentially expressed genes between SM and EO tissues in the mormyrid Brienomyrus brachyistius, which were identified using suppressive subtractive hybridization (SSH). Forward and reverse SSH was performed on tissue samples of EO and SM resulting in one cDNA library enriched with mRNAs expressed in EO, and a second library representing mRNAs unique to SM. Nineteen expressed sequence tags (ESTs) were identified in EO and nine were identified in SM using BLAST searching of Danio rerio sequences available in NCBI databases. We confirmed differential expression of all 28 ESTs using RT-PCR. In EO, these ESTs represent four classes of proteins: (1) ion pumps, including the α- and β-subunits of Na(+)/K(+)-ATPase, and a plasma membrane Ca(2+)-ATPase; (2) Ca(2+)-binding protein S100, several parvalbumin paralogs, calcyclin-binding protein and neurogranin; (3) sarcomeric proteins troponin I, myosin heavy chain and actin-related protein complex subunit 3 (Arcp3); and (4) the transcription factors enhancer of rudimentary homolog (ERH) and myocyte enhancer factor 2A (MEF2A). Immunohistochemistry and western blotting were used to demonstrate the translation of seven proteins (myosin heavy chain, Na(+)/K(+)-ATPase, plasma membrane Ca(2+)-ATPase, MEF2, troponin and parvalbumin) and their cellular localization in EO and SM. Our findings suggest that mormyrids express several paralogs of muscle-specific genes and the proteins they encode in EOs, unlike gymnotiforms, which may post-transcriptionally repress several sarcomeric proteins. In spite of the similarity in the physiology and function of EOs in mormyrids and gymnotiforms, this study indicates that the mechanisms of development in the two groups may be considerably different.

Indexed as

Gene Expression ProfilingGene Expression RegulationAnimalsBlotting, WesternElectric FishElectric OrganExpressed Sequence TagsFish ProteinsGymnotiformesImmunohistochemistryMEF2 Transcription FactorsMuscle, SkeletalMyogenic Regulatory FactorsProtein TransportReverse Transcriptase Polymerase Chain ReactionRNA, MessengerFish ProteinsMEF2 Transcription FactorsMyogenic Regulatory FactorsRNA, Messenger

Identifiers

PMID22723488
PMCPMC3379852
OpenAlexW2144507762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.