Evidence map›Paper›PMID 22722930›Full record

ArticleThe Journal of biological chemistry2012

Twelve transmembrane helices form the functional core of mammalian MATE1 (multidrug and toxin extruder 1) protein.

Xiaohong Zhang, Xiao He, Joseph Baker, Florence Tama, Geoffrey Chang, Stephen H Wright

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

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  17. What do drug transporters really do?Nature reviews. Drug discovery · 2015
    Review
  18. Article
  19. Substrate-dependent ligand inhibition of the human organic cation transporter OCT2.The Journal of pharmacology and experimental therapeutics · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xiaohong ZhangDepartment of Physiology, University of Arizona, Tucson, Arizona 85724, USA.
Xiao He
Joseph Baker
Florence Tama
Geoffrey Chang
Stephen H Wright
University of Arizona · USScripps Research Institute · US

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
TransportPDB: Center for the X-ray Structure Determination of Human TransportersU54GM094610 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STOWELL, MICHAEL H. B. · 2010 to 2014
$12.2M
Molecular Organization of the Organic Cation-Proton Exchanger, MATE1R01DK080801 · NIDDK · UNIVERSITY OF ARIZONA · PI CHANG, GEOFFREY A, WRIGHT, STEPHEN H · 2010 to 2014
$2.5M
NIDDK NIH HHS 1R01DK080801NIDDK NIH HHS R01 DK080801NIEHS NIH HHS 5P30ES006694NIEHS NIH HHS P30 ES006694NIGMS NIH HHS 1U54GM094610NIGMS NIH HHS U54 GM094610
6 · The paper itself

Abstract

The x-ray structure of the prototypic MATE family member, NorM from Vibrio cholerae, reveals a protein fold composed of 12 transmembrane helices (TMHs), confirming hydropathy analyses of the majority of (prokaryotic and plant) MATE transporters. However, the mammalian MATEs are generally predicted to have a 13(th) TMH and an extracellular C terminus. Here we affirm this prediction, showing that the C termini of epitope-tagged, full-length human, rabbit, and mouse MATE1 were accessible to antibodies from the extracellular face of the membrane. Truncation of these proteins at or near the predicted junction between the 13(th) TMH and the long cytoplasmic loop that precedes it resulted in proteins that (i) trafficked to the membrane and (ii) interacted with antibodies only after permeabilization of the plasma membrane. CHO cells expressing rbMate1 truncated at residue Gly-545 supported levels of pH-sensitive transport similar to that of cells expressing the full-length protein. Although the high transport rate of the Gly-545 truncation mutant was associated with higher levels of membrane expression (than full-length MATE1), suggesting the 13(th) TMH may influence substrate translocation, the selectivity profile of the mutant indicated that TMH13 has little impact on ligand binding. We conclude that the functional core of MATE1 consists of 12 (not 13) TMHs. Therefore, we used the x-ray structure of NorM to develop a homology model of the first 12 TMHs of MATE1. The model proved to be stable in molecular dynamic simulations and agreed with topology evident from preliminary cysteine scanning of intracellular versus extracellular loops.

Indexed as

Models, MolecularAnimalsAntiportersBacterial ProteinsCell MembraneCHO CellsCricetinaeCricetulusHumansMaleMiceOrganic Cation Transport ProteinsProtein Structure, SecondaryProtein TransportRabbitsStructural Homology, ProteinAntiportersBacterial ProteinsMATE1 protein, mouseNorM protein, bacteriaOrganic Cation Transport ProteinsSLC47A1 protein, human

Identifiers

PMID22722930
PMCPMC3431635
OpenAlexW1967629651

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.