Evidence map›Paper›PMID 22722195›Full record

ArticleNature2012

Structure of yeast Argonaute with guide RNA.

Kotaro Nakanishi, David E Weinberg, David P Bartel, Dinshaw J Patel

Open access · greenAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 228 papers.

0numbers the graph read from it
0cells of the map it votes in
228citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

228 citing papers in PubMed, 363 citations in OpenAlex.

  1. Article
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  12. Plant microRNA maturation and function.Nature reviews. Molecular cell biology · 2026
    Review
  13. Article
  14. Article
  15. A Mesophilic Argonaute fromBiomolecules · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

168 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kotaro NakanishiStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
David E Weinberg
David P Bartel
Dinshaw J Patel
Memorial Sloan Kettering Cancer Center · USHoward Hughes Medical Institute · USWhitehead Institute for Biomedical Research · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
RNA CONFORMATION AND CATALYSISR01GM061835 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI BARTEL, DAVID P · 2000 to 2008
$2.5M
RNA Conformation and CatalysisR37GM061835 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI BARTEL, DAVID P · 2011 to 2016
$2.3M
siRNA-Mediated Silencing of Viral Infection & Viral Suppressors of RNA SilencingR01AI068776 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI PATEL, DINSHAW J · 2006 to 2010
$1.8M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NIAID NIH HHS AI068776NIAID NIH HHS R01 AI068776NIGMS NIH HHS GM61835NIGMS NIH HHS R01 GM061835NIGMS NIH HHS R37 GM061835
6 · The paper itself

Abstract

The RNA-induced silencing complex, comprising Argonaute and guide RNA, mediates RNA interference. Here we report the 3.2 Å crystal structure of Kluyveromyces polysporus Argonaute (KpAGO) fortuitously complexed with guide RNA originating from small-RNA duplexes autonomously loaded by recombinant KpAGO. Despite their diverse sequences, guide-RNA nucleotides 1-8 are positioned similarly, with sequence-independent contacts to bases, phosphates and 2'-hydroxyl groups pre-organizing the backbone of nucleotides 2-8 in a near-A-form conformation. Compared with prokaryotic Argonautes, KpAGO has numerous surface-exposed insertion segments, with a cluster of conserved insertions repositioning the N domain to enable full propagation of guide-target pairing. Compared with Argonautes in inactive conformations, KpAGO has a hydrogen-bond network that stabilizes an expanded and repositioned loop, which inserts an invariant glutamate into the catalytic pocket. Mutation analyses and analogies to ribonuclease H indicate that insertion of this glutamate finger completes a universally conserved catalytic tetrad, thereby activating Argonaute for RNA cleavage.

Indexed as

Argonaute ProteinsBase SequenceBiocatalysisCatalytic DomainCrystallography, X-RayEukaryotic CellsFungal ProteinsKluyveromycesModels, MolecularMolecular ConformationMolecular Sequence DataRNA, Small UntranslatedSaccharomycetalesArgonaute ProteinsFungal ProteinsRNA, Small Untranslated

Identifiers

PMID22722195
PMCPMC3853139
OpenAlexW2102292691

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.