Evidence map›Paper›PMID 22722193›Full record

ArticleNature2012

Whole-genome analysis informs breast cancer response to aromatase inhibition.

Matthew J Ellis, Li Ding, Dong Shen, Jingqin Luo, Vera J Suman, John W Wallis, Brian A Van Tine, Jeremy Hoog, Reece J Goiffon, Theodore C Goldstein and 49 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 601 papers.

0numbers the graph read from it
0cells of the map it votes in
601citing papers in PubMed
46.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

601 citing papers in PubMed, 1,024 citations in OpenAlex.

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  8. SuppressedInternational journal of molecular sciences · 2026
    Article
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  11. RUNX1-deficiency drives immune-active ERbioRxiv : the preprint server for biology · 2026
    Article
  12. Review
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541 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

59 authors at 10 institutions in 2 countries.

Matthew J EllisDepartment of Internal Medicine, Division of Oncology, Washington University, St Louis, Missouri 63110, USA.
Li Ding
Dong Shen
Jingqin Luo
Vera J Suman
John W Wallis
Brian A Van Tine
Jeremy Hoog
Reece J Goiffon
Theodore C Goldstein
Sam Ng
Li Lin
Robert Crowder
Jacqueline Snider
Karla Ballman
Jason Weber
Ken Chen
Daniel C Koboldt
Cyriac Kandoth
William S Schierding
Joshua F McMichael
Christopher A Miller
Charles Lu
Christopher C Harris
Michael D McLellan
Michael C Wendl
Katherine DeSchryver
D Craig Allred
Laura Esserman
Gary Unzeitig
Julie Margenthaler
G V Babiera
P Kelly Marcom
J M Guenther
Marilyn Leitch
Kelly Hunt
John Olson
Yu Tao
Christopher A Maher
Lucinda L Fulton
Robert S Fulton
Michelle Harrison
Ben Oberkfell
Feiyu Du
Ryan Demeter
Tammi L Vickery
Adnan Elhammali
Helen Piwnica-Worms
Sandra McDonald
Mark Watson
David J Dooling
David Ota
Li-Wei Chang
Ron Bose
Timothy J Ley
David Piwnica-Worms
Joshua M Stuart
Richard K Wilson
Elaine R Mardis
Washington University in St. Louis · USBreast Cancer Research Foundation · USDuke University · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, Santa Cruz · USMayo Clinic · USDoctors Hospital of Laredo · USGood Samaritan Hospital · USHarold C. Simmons Comprehensive Cancer CenterUniversity of California, San Francisco · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
AMERICAN COLLEGE OF SURGEONS ONCOLOGY TRIALS GROUPU10CA076001 · NCI · DUKE UNIVERSITY · PI BERTAGNOLLI, MONICA M · 1998 to 2013
$62.1M
THE ALLIANCE NCTN BIOREPOSITORY AND BIOSPECIMEN RESOURCEU24CA196171 · NCI · WASHINGTON UNIVERSITY · PI Mine Cicek, Wendy Frankel · 2015 to 2026
$35.0M
WU-MDACC Inter-Institutional Molecular Imaging CenterP50CA094056 · NCI · WASHINGTON UNIVERSITY · PI KOPAN, RAPHAEL · 2002 to 2016
$26.3M
SPORE IN BREAST CANCERP50CA068438 · NCI · DUKE UNIVERSITY · PI LYERLY, HERBERT KIM · 1995 to 2007
$14.3M
UCSC-Buck Inst. Genome Data Analysis Center for TCGA Research Network (GDAC)U24CA143858 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI BENZ, CHRISTOPHER, HAUSSLER, DAVID H · 2009 to 2016
$8.9M
Biological Breast Cancer Classification by qRT-PCRU01CA114722 · NCI · WASHINGTON UNIVERSITY · PI ELLIS, MATTHEW J · 2005 to 2009
$8.7M
NOVEL BIOMARKERS FOR AROMATASE INHIBITOR THERAPYR01CA095614 · NCI · WASHINGTON UNIVERSITY · PI ELLIS, MATTHEW J, LUO, JINGQIN · 2003 to 2013
$5.6M
Howard Hughes Medical InstituteNCI NIH HHS 3P50 CA68438NCI NIH HHS P30 CA091842NCI NIH HHS P50 CA068438NCI NIH HHS P50 CA094056NCI NIH HHS P50 CA94056NCI NIH HHS R01 CA095614NCI NIH HHS U01 CA114722NCI NIH HHS U10 CA076001NCI NIH HHS U24 CA143858NCI NIH HHS U24 CA196171NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079
6 · The paper itself

Abstract

To correlate the variable clinical features of oestrogen-receptor-positive breast cancer with somatic alterations, we studied pretreatment tumour biopsies accrued from patients in two studies of neoadjuvant aromatase inhibitor therapy by massively parallel sequencing and analysis. Eighteen significantly mutated genes were identified, including five genes (RUNX1, CBFB, MYH9, MLL3 and SF3B1) previously linked to haematopoietic disorders. Mutant MAP3K1 was associated with luminal A status, low-grade histology and low proliferation rates, whereas mutant TP53 was associated with the opposite pattern. Moreover, mutant GATA3 correlated with suppression of proliferation upon aromatase inhibitor treatment. Pathway analysis demonstrated that mutations in MAP2K4, a MAP3K1 substrate, produced similar perturbations as MAP3K1 loss. Distinct phenotypes in oestrogen-receptor-positive breast cancer are associated with specific patterns of somatic mutations that map into cellular pathways linked to tumour biology, but most recurrent mutations are relatively infrequent. Prospective clinical trials based on these findings will require comprehensive genome sequencing.

Indexed as

AnastrozoleAndrostadienesAntineoplastic AgentsAromataseAromatase InhibitorsBreast NeoplasmsDNA RepairExomeExonsFemaleGenetic VariationGenome, HumanHumansLetrozoleMAP Kinase Kinase 4MAP Kinase Kinase Kinase 1AnastrozoleAndrostadienesAntineoplastic AgentsAromataseAromatase InhibitorsexemestaneLetrozoleMAP2K4 protein, humanMAP3K1 protein, humanMAP Kinase Kinase 4MAP Kinase Kinase Kinase 1NitrilesReceptors, EstrogenTriazoles

Identifiers

PMID22722193
PMCPMC3383766
OpenAlexW2150757282

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.