Evidence map›Paper›PMID 22721673›Full record

ArticleExperimental and molecular pathology2013

Nef interaction with actin compromises human podocyte actin cytoskeletal integrity.

Raymond Tan, Hitesh Patni, Pranai Tandon, Liming Luan, Bipin Sharma, Divya Salhan, Moin A Saleem, Peter W Mathieson, Ashwani Malhotra, Mohammad Husain and 2 more

Abstract read
In one paragraph

Article in Experimental and molecular pathology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Novel role of HIV-1 Nef in regulating the ubiquitination of cellular proteins.Frontiers in cellular and infection microbiology · 2023
    Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Mechanisms of Proteinuria in HIV.Frontiers in medicine · 2021
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Targeting tumor invasion: the roles of MDA-9/Syntenin.Expert opinion on therapeutic targets · 2015
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Raymond TanDepartment of Immunology, Feinstein Institute for Medical Research, North Shore LIJ Health System, NY, USA.
Hitesh Patni
Pranai Tandon
Liming Luan
Bipin Sharma
Divya Salhan
Moin A Saleem
Peter W Mathieson
Ashwani Malhotra
Mohammad Husain
Poornima Upadhya
Pravin C Singhal
Feinstein Institute for Medical Research · USUniversity of Bristol · GBNorthwell Health · US

Funding

p66ShcA in HIV associated NephropathyR01DK083931 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2013
$2.5M
Renin Angioensin Aldosterone System in Drub Abuse and HIV-associated NephropathyR01DK084910 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2014
$1.7M
Medical Research Council G0800200NIDDK NIH HHS R01 DK083931NIDDK NIH HHS R01DK083931NIDDK NIH HHS R01 DK084910NIDDK NIH HHS R01DK084910
6 · The paper itself

Abstract

The HIV-1 accessory protein Nef is considered to play an important role in the development of a podocyte phenotype in HIV-1 associated nephropathy. We hypothesized that Nef may be altering the podocyte phenotype both structurally and functionally. To elucidate the involved mechanisms, podocyte proteins interacting with Nef were identified using GST pull down assay and yeast two hybrid assay. The GST pull down assay on protein extracts made from stable colonies of conditionally immortalized human podocytes expressing Nef (Nef/CIHP) displayed a band at 45 kD, which was identified as actin by mass spectrometry. Yeast two hybrid assay identified the following Nef-interacting proteins: syntrophin, filamin B, syntaxin, translational elongation factor 1, and zyxin. The Nef-actin and Nef-zyxin interactions were confirmed by co-localization studies on Nef/CIHP stable cell lines. The co-localization studies also showed that Nef/CIHP stable cell lines had a decreased number of actin filaments (stress fibers), displayed formation of lamellipodia, and increased number of podocyte projections (filopodia). Nef/CIHP displayed an enhanced cortical F-actin score index (P<0.001) and thus indicated a reorganization of F-actin in the cortical regions. Microarray analysis showed that Nef enhanced the expression of Rac1, syndecan-4, Rif, and CDC42 and attenuated the expression of syndecan-3 and syntenin. In addition, Nef/CIHPs displayed a diminished sphingomyelinase (ASMase) activity. Functionally, Nef/CIHPs displayed diminished attachment and enhanced detachment to their substrate. These findings indicate that Nef interaction with actin compromises the podocyte cytoskeleton integrity.

Indexed as

Actin CytoskeletonActinsAIDS-Associated Nephropathycdc42 GTP-Binding ProteinCells, CulturedContractile ProteinsDystrophin-Associated ProteinsFilaminsHumansMicrofilament Proteinsnef Gene Products, Human Immunodeficiency VirusPodocytesPseudopodiaQa-SNARE Proteinsrac1 GTP-Binding Proteinrho GTP-Binding ProteinsActinscdc42 GTP-Binding ProteinContractile ProteinsDystrophin-Associated ProteinsFilaminsMicrofilament Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1Qa-SNARE Proteinsrac1 GTP-Binding ProteinRAC1 protein, humanRHOF protein, humanrho GTP-Binding ProteinsSDC3 protein, humanSDC4 protein, humanSphingomyelin PhosphodiesteraseSyndecan-3Syndecan-4SynteninssyntrophinZyxin

Identifiers

PMID22721673
PMCPMC3463768
OpenAlexW1975008539

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.