Evidence map›Paper›PMID 22721650›Full record

ArticleThe Journal of allergy and clinical immunology2012

LPS-responsive beige-like anchor (LRBA) gene mutation in a family with inflammatory bowel disease and combined immunodeficiency.

Abdullah Alangari, Abdulrahman Alsultan, Nouran Adly, Michel J Massaad, Iram Shakir Kiani, Abdulrahman Aljebreen, Emad Raddaoui, Abdul-Kareem Almomen, Saleh Al-Muhsen, Raif S Geha and 1 more

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In one paragraph

Article in The Journal of allergy and clinical immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 1 synthesis or guideline pooled it, 247 citations in OpenAlex.

  1. Pooled it
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  16. Autoimmunity in Primary Immunodeficiencies (PID).Clinical reviews in allergy & immunology · 2023
    Review
  17. Article
  18. Article
  19. Early-Onset Diabetes in an Infant with a Novel Frameshift Mutation in LRBA.International journal of environmental research and public health · 2022
    Article
  20. Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Abdullah AlangariDepartment of Pediatrics, King Khalid University Hospital and College of Medicine, King Saud University, Riyadh, Saudi Arabia.
Abdulrahman Alsultan
Nouran Adly
Michel J Massaad
Iram Shakir Kiani
Abdulrahman Aljebreen
Emad Raddaoui
Abdul-Kareem Almomen
Saleh Al-Muhsen
Raif S Geha
Fowzan S Alkuraya
King Khalid University Hospital · SAKing Faisal Specialist Hospital & Research Centre · SABoston Children's Hospital · USKing Saud University · SA

Funding

Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
Combined SNP analysis and whole genome sequencing to discover immunodeficiency geR03AI094017 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI GEHA, RAIF SALIM · 2011 to 2012
$174k
NIAID NIH HHS AI-076210NIAID NIH HHS AI094017NIAID NIH HHS P01 AI076210NIAID NIH HHS R03 AI094017
6 · The paper itself

Abstract

backgroundClinical immunology has traditionally relied on accurate phenotyping of the patient's immune dysfunction for the identification of a candidate gene or genes for sequencing and molecular confirmation. Although this is also true for other branches of medicine, the marked variability in immune-related phenotypes and the highly complex network of molecules that confer normal host immunity are challenges that clinical immunologists often face in their quest to establish a specific genetic diagnosis.

objectiveWe sought to identify the underlying genetic cause in a consanguineous family with chronic inflammatory bowel disease-like disorder and combined immunodeficiency.

methodsWe performed exome sequencing followed by autozygome filtration.

resultsA truncating mutation in LPS-responsive beige-like anchor (LRBA), which abolished protein expression, was identified as the most likely candidate variant in this family.

conclusionThe combined exome sequencing and autozygosity mapping approach is a powerful tool in the study of atypical immune dysfunctions. We identify LRBA as a novel immunodeficiency candidate gene the precise role of which in the immune system requires future studies.

Indexed as

MutationAdaptor Proteins, Signal TransducingAdolescentBase SequenceChildConsanguinityDNA Mutational AnalysisExomeFamilyHumansImmunophenotypingInflammatory Bowel DiseasesLipopolysaccharidesMaleMolecular Sequence DataPedigreeAdaptor Proteins, Signal TransducingLipopolysaccharidesLRBA protein, human

Identifiers

PMID22721650
PMCPMC3582381
OpenAlexW2101934322

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.