ArticleBMC bioinformatics2012
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.
Article in BMC bioinformatics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 156 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
156 citing papers in PubMed.
- Trial
- Multifaceted human gut microbiome data associated with health and nutrition.Frontiers in microbiology · 2026Review
- Concurrent stimulation of diflufenican biodegradation and changes in the active microbiome in gravel revealed by Total RNA.Microbiology spectrum · 2025Article
- Arctic Soil C and N Cycling Are Linked With Microbial Adaptations During Drought.Global change biology · 2025Article
- Microbiome insights from a South African cultural and natural landmark cave using metagenomics next-generation sequencing.Microbiology resource announcements · 2025Article
- Nitrogen metabolism of the highly ureolytic bacterium Proteus penneri S99 isolated from the rumen.BMC microbiology · 2025Article
- Rhizosphere microbiome influence on tomato growth under low-nutrient settings.FEMS microbiology ecology · 2025Article
- Metagenomic analysis reveals methanogenic and other archaeal genes in the digestive tract of invasive Japanese beetle larvae and associated soil.Frontiers in microbiology · 2025Article
- Analysis of metagenomic data.Nature reviews. Methods primers · 2025Article
- Enhancing bloodstream infection diagnostics: a novel filtration and targeted next-generation sequencing approach for precise pathogen identification.Frontiers in microbiology · 2025Article
- Differential interactions of Rickettsia species with tick microbiota in Rh. sanguineus and Rh. turanicus.Scientific reports · 2024Article
- Metagenomic functional profiling: to sketch or not to sketch?Bioinformatics (Oxford, England) · 2024Article
- Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024Article
- High-throughput metagenomic assessment of Cango Cave microbiome-A South African limestone cave.Data in brief · 2024Article
- Article
- The Feather Moss Hylocomium splendens Affects the Transcriptional Profile of a Symbiotic Cyanobacterium in Relation to Acquisition and Turnover of Key Nutrients.Microbial ecology · 2024Article
- Metagenomics reveals effects of fluctuating water conditions on functional pathways in plant litter microbial community.Scientific reports · 2023Article
- Genomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis Q-426.BMC genomics · 2023Article
- Dataset of shotgun metagenomic evaluation of lettuce (Data in brief · 2023Article
- Shotgun metagenomics dataset ofData in brief · 2023Article
96 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundComputing of sequence similarity results is becoming a limiting factor in metagenome analysis. Sequence similarity search results encoded in an open, exchangeable format have the potential to limit the needs for computational reanalysis of these data sets. A prerequisite for sharing of similarity results is a common reference. DESCRIPTION: We introduce a mechanism for automatically maintaining a comprehensive, non-redundant protein database and for creating a quarterly release of this resource. In addition, we present tools for translating similarity searches into many annotation namespaces, e.g. KEGG or NCBI's GenBank.
conclusionsThe data and tools we present allow the creation of multiple result sets using a single computation, permitting computational results to be shared between groups for large sequence data sets.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.