Evidence map›Paper›PMID 22720744›Full record

ArticleJournal of medicinal chemistry2012

Urea-based inhibitors of Trypanosoma brucei methionyl-tRNA synthetase: selectivity and in vivo characterization.

Sayaka Shibata, J Robert Gillespie, Ranae M Ranade, Cho Yeow Koh, Jessica E Kim, Joy U Laydbak, Frank H Zucker, Wim G J Hol, Christophe L M J Verlinde, Frederick S Buckner and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  4. ExploringPharmaceuticals (Basel, Switzerland) · 2023
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  15. Synthesis ofMolecules (Basel, Switzerland) · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Sayaka ShibataDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
J Robert Gillespie
Ranae M Ranade
Cho Yeow Koh
Jessica E Kim
Joy U Laydbak
Frank H Zucker
Wim G J Hol
Christophe L M J Verlinde
Frederick S Buckner
Erkang Fan
University of Washington · US

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Structure-based Optimization of T. brucei methionyl tRNA Synthetase InhibitorsR01AI097177 · NIAID · UNIVERSITY OF WASHINGTON · PI BUCKNER, FREDERICK SIMMONS, FAN, ERKANG · 2012 to 2019
$5.3M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
Structures and selective inhibition of tRNA synthetases from pathogenic protozoaR56AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2009 to 2009
$732k
NIAID NIH HHS AI067921NIAID NIH HHS AI084004NIAID NIH HHS P01 AI067921NIAID NIH HHS R01 AI084004NIAID NIH HHS R01 AI097177NIAID NIH HHS R56 AI084004
6 · The paper itself

Abstract

Urea-based methionyl-tRNA synthetase inhibitors were designed, synthesized, and evaluated for their potential toward treating human African trypanosomiasis (HAT). With the aid of a homology model and a structure-activity-relationship approach, low nM inhibitors were discovered that show high selectivity toward the parasite enzyme over the closest human homologue. These compounds inhibit parasite growth with EC(50) values as low as 0.15 μM while having low toxicity to mammalian cells. Two compounds (2 and 26) showed excellent membrane permeation in the MDR1-MDCKII model and encouraging oral pharmacokinetic properties in mice. Compound 2 was confirmed to enter the CNS in mice. Compound 26 had modest suppressive activity against Trpanosoma brucei rhodesiense in the mouse model, suggesting that more potent analogues or compounds with higher exposures need to be developed. The urea-based inhibitors are thus a promising starting point for further optimization toward the discovery of orally available and CNS active drugs to treat HAT.

Indexed as

Administration, OralAminoquinolinesAnimalsBiological AvailabilityBrainCell LineCell Membrane PermeabilityEnzyme InhibitorsFemaleHumansMethionine-tRNA LigaseMiceModels, MolecularProtein ConformationSubstrate SpecificityTrypanosoma brucei bruceiAminoquinolinesaminoquinoloneEnzyme InhibitorsMethionine-tRNA LigaseUrea

Identifiers

PMID22720744
PMCPMC3480199
OpenAlexW2087809240

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.