Evidence map›Paper›PMID 22720264›Full record

ArticleCell reports2012

Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.

Chih-Chi Yuan, Adam G W Matthews, Yi Jin, Chang Feng Chen, Brad A Chapman, Toshiro K Ohsumi, Karen C Glass, Tatiana G Kutateladze, Mark L Borowsky, Kevin Struhl and 1 more

Abstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Onametostat, a PfPRMT5 inhibitor, exhibits antimalarial activity toAntimicrobial agents and chemotherapy · 2024
    Article
  6. Article
  7. Mechanism of Histone Arginine Methylation Dynamic Change in Cellular Stress.International journal of molecular sciences · 2024
    Article
  8. Review
  9. Article
  10. Review
  11. Protein arginine methylation in transcription and epigenetic regulation.Frontiers in epigenetics and epigenomics · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. PRMT5 Is Involved in Spermatogonial Stem Cells Maintenance by RegulatingFrontiers in cell and developmental biology · 2021
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chih-Chi YuanDepartment of Molecular Biology, Massachusetts General Hospital and Department of Genetics, Harvard Medical School, Boston, MA 02114, USA.
Adam G W Matthews
Yi Jin
Chang Feng Chen
Brad A Chapman
Toshiro K Ohsumi
Karen C Glass
Tatiana G Kutateladze
Mark L Borowsky
Kevin Struhl
Marjorie A Oettinger

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
MOLECULAR MECHANISMS OF YEAST TRANSCRIPTIONAL INITIATIONR01GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1985 to 2018
$13.6M
VDJ RECOMBINATION ACTIVATING GENES--FUNCTIONAL ANALYSISR01GM048026 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI OETTINGER, MARJORIE A · 1992 to 2009
$3.5M
Functional role of RAG2 H3K4me3 interaction in V(D)J recombinationR01AI083510 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI OETTINGER, MARJORIE A · 2010 to 2014
$2.2M
MECHANISMS OF YEAST TRANSCRIPTIONAL INITITATIONR37GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1993 to 2002
$2.1M
Molecular analysis of CHD4R01GM096863 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2011 to 2014
$1.4M
Is symmetrical dimethylation of Arginine 2 of Histone H3 used as an epigenetic siR01DK082711 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI OETTINGER, MARJORIE A · 2008 to 2010
$1.3M
Structural basis of signaling by ING2 PHDR01CA113472 · NCI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2006 to 2010
$987k
Functional role of RAG2 H3K4me3 interaction in V(D)J recombinationR56AI083510 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI OETTINGER, MARJORIE A · 2009 to 2009
$211k
NCI NIH HHS CA113472NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA113472NIAID NIH HHS AI083510NIAID NIH HHS R01 AI083510NIAID NIH HHS R56 AI083510NIDDK NIH HHS DK082711NIDDK NIH HHS R01 DK082711NIGMS NIH HHS GM048026NIGMS NIH HHS GM30186NIGMS NIH HHS R01 GM030186NIGMS NIH HHS R01 GM048026NIGMS NIH HHS R01 GM096863NIGMS NIH HHS R37 GM030186
6 · The paper itself

Abstract

The preferential in vitro interaction of the PHD finger of RAG2, a subunit of the V(D)J recombinase, with histone H3 tails simultaneously trimethylated at lysine 4 and symmetrically dimethylated at arginine 2 (H3R2me2sK4me3) predicted the existence of the previously unknown histone modification H3R2me2s. Here, we report the in vivo identification of H3R2me2s . Consistent with the binding specificity of the RAG2 PHD finger, high levels of H3R2me2sK4me3 are found at antigen receptor gene segments ready for rearrangement. However, this double modification is much more general; it is conserved throughout eukaryotic evolution. In mouse, H3R2me2s is tightly correlated with H3K4me3 at active promoters throughout the genome. Mutational analysis in S. cerevisiae reveals that deposition of H3R2me2s requires the same Set1 complex that deposits H3K4me3. Our work suggests that H3R2me2sK4me3, not simply H3K4me3 alone, is the mark of active promoters and that factors that recognize H3K4me3 will have their binding modulated by their preference for H3R2me2s.

Indexed as

AnimalsArginineConserved SequenceEukaryotaEvolution, MolecularGenetic LociGenomeHistone-Lysine N-MethyltransferaseHistonesLysineMethylationMiceReceptors, AntigenRecombination, GeneticRNA, Small InterferingSaccharomyces cerevisiaeArginineHistone-Lysine N-MethyltransferaseHistonesLysineReceptors, AntigenRNA, Small InterferingSaccharomyces cerevisiae ProteinsSET1 protein, S cerevisiae

Identifiers

PMID22720264
PMCPMC3377377

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.