Evidence map›Paper›PMID 22718827›Full record

ArticleJournal of virology2012

Proteome-wide overexpression of host proteins for identification of factors affecting tombusvirus RNA replication: an inhibitory role of protein kinase C.

Muhammad Shah Nawaz-ul-Rehman, Natalia Martinez-Ochoa, Helene Pascal, Zsuzsanna Sasvari, Christin Herbst, Kai Xu, Jannine Baker, Monika Sharma, Alan Herbst, Peter D Nagy

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Contribution of yeast models to virus research.Applied microbiology and biotechnology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Muhammad Shah Nawaz-ul-RehmanDepartment of Plant Pathology, University of Kentucky, Lexington, Kentucky, USA.
Natalia Martinez-Ochoa
Helene Pascal
Zsuzsanna Sasvari
Christin Herbst
Kai Xu
Jannine Baker
Monika Sharma
Alan Herbst
Peter D Nagy
University of Kentucky · US

Funding

The role of the host Ca/Mn pump in emergence of novel viral RNA recombinantsR21AI079457 · NIAID · UNIVERSITY OF KENTUCKY · PI NAGY, PETER · 2009 to 2010
$379k
NIAID NIH HHS 5R21AI079457-02NIAID NIH HHS R21 AI079457
6 · The paper itself

Abstract

To identify host genes affecting replication of Tomato bushy stunt virus (TBSV), a small model positive-stranded RNA virus, we overexpressed 5,500 yeast proteins individually in Saccharomyces cerevisiae, which supports TBSV replication. In total, we identified 141 host proteins, and overexpression of 40 of those increased and the remainder decreased the accumulation of a TBSV replicon RNA. Interestingly, 36 yeast proteins were identified previously by various screens, greatly strengthening the relevance of these host proteins in TBSV replication. To validate the results from the screen, we studied the effect of protein kinase C1 (Pkc1), a conserved host kinase involved in many cellular processes, which inhibited TBSV replication when overexpressed. Using a temperature-sensitive mutant of Pkc1p revealed a high level of TBSV replication at a semipermissive temperature, further supporting the idea that Pkc1p is an inhibitor of TBSV RNA replication. A direct inhibitory effect of Pkc1p was shown in a cell-free yeast extract-based TBSV replication assay, in which Pkc1p likely phosphorylates viral replication proteins, decreasing their abilities to bind to the viral RNA. We also show that cercosporamide, a specific inhibitor of Pkc-like kinases, leads to increased TBSV replication in yeast, in plant single cells, and in whole plants, suggesting that Pkc-related pathways are potent inhibitors of TBSV in several hosts.

Indexed as

Down-RegulationHost-Pathogen InteractionsNicotianaPlant DiseasesPlant ProteinsProtein Kinase CProteomeRNA, ViralSaccharomyces cerevisiae ProteinsTombusvirusVirus ReplicationPKC1 protein, S cerevisiaePlant ProteinsProtein Kinase CProteomeRNA, ViralSaccharomyces cerevisiae Proteins

Identifiers

PMID22718827
PMCPMC3416130
OpenAlexW2107480012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.