Evidence map›Paper›PMID 22718775›Full record

ArticlePlant physiology2012

Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically.

Selahattin Danisman, Froukje van der Wal, Stijn Dhondt, Richard Waites, Stefan de Folter, Andrea Bimbo, Aalt D J van Dijk, Jose M Muino, Lucas Cutri, Marcelo C Dornelas and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 337 citations in OpenAlex.

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  11. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2025
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  14. Systematic Analysis of thePlants (Basel, Switzerland) · 2025
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  15. Genome-Wide Exploration and Characterization of theInternational journal of molecular sciences · 2025
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  16. Overexpression ofInternational journal of molecular sciences · 2025
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  17. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2025
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  19. Review
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112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 4 countries.

Selahattin DanismanPlant Research International, Bioscience, 6708PB Wageningen, The Netherlands.
Froukje van der Wal
Stijn Dhondt
Richard Waites
Stefan de Folter
Andrea Bimbo
Aalt D J van Dijk
Jose M Muino
Lucas Cutri
Marcelo C Dornelas
Gerco C Angenent
Richard G H Immink
Research International (United States) · USCentre for BioSystems Genomics · NLGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR1 (TCP) transcription factors control developmental processes in plants. The 24 TCP transcription factors encoded in the Arabidopsis (Arabidopsis thaliana) genome are divided into two classes, class I and class II TCPs, which are proposed to act antagonistically. We performed a detailed phenotypic analysis of the class I tcp20 mutant, showing an increase in leaf pavement cell sizes in 10-d-old seedlings. Subsequently, a glucocorticoid receptor induction assay was performed, aiming to identify potential target genes of the TCP20 protein during leaf development. The LIPOXYGENASE2 (LOX2) and class I TCP9 genes were identified as TCP20 targets, and binding of TCP20 to their regulatory sequences could be confirmed by chromatin immunoprecipitation analyses. LOX2 encodes for a jasmonate biosynthesis gene, which is also targeted by class II TCP proteins that are under the control of the microRNA JAGGED AND WAVY (JAW), although in an antagonistic manner. Mutation of TCP9, the second identified TCP20 target, resulted in increased pavement cell sizes during early leaf developmental stages. Analysis of senescence in the single tcp9 and tcp20 mutants and the tcp9tcp20 double mutants showed an earlier onset of this process in comparison with wild-type control plants in the double mutant only. Both the cell size and senescence phenotypes are opposite to the known class II TCP mutant phenotype in JAW plants. Altogether, these results point to an antagonistic function of class I and class II TCP proteins in the control of leaf development via the jasmonate signaling pathway.

Indexed as

ArabidopsisArabidopsis ProteinsCell SizeCyclopentanesGene Expression Regulation, PlantGlucocorticoidsGreen Fluorescent ProteinsModels, BiologicalMutationOxylipinsPhenotypePlant LeavesPromoter Regions, GeneticProtein BindingProtein TransportTranscription FactorsArabidopsis ProteinsCyclopentanesGlucocorticoidsGreen Fluorescent Proteinsjasmonic acidOxylipinsTCP9 protein, ArabidopsisTranscription Factors

Identifiers

PMID22718775
PMCPMC3425195
OpenAlexW2059615241

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.