Evidence map›Paper›PMID 22718773›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2012

Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation.

Ying Taur, Joao B Xavier, Lauren Lipuma, Carles Ubeda, Jenna Goldberg, Asia Gobourne, Yeon Joo Lee, Krista A Dubin, Nicholas D Socci, Agnes Viale and 4 more

2 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 607 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
607citing papers in PubMed, 3 pooled it
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06258551 unknown statusnot on this mapstarted 2020, after this paper: background citation

Dynamics of Colonization and Infection by Multidrug-Resistant Pathogens in Immunocompromised and Critically Ill Patients

TypeobservationalSponsorThe Methodist Hospital Research InstituteRan2020 to 2026Enrolled1,000ConditionsAntimicrobial Drug Resistance, Antibiotic Resistant Infection, Clostridium Difficile, Carbapenem-Resistant Enterobacteriaceae Infection
NCT06355583 phase2recruitingnot on this mapstarted 2024, after this paper: background citation

Intestinal Microbiota Transplant Prior to Allogeneic Stem Cell Transplant (MAST) Trial

TypeinterventionalSponsorImperial College LondonRan2024 to 2027Enrolled50ConditionsAcute Lymphoblastic Leukaemia, Acute Leukemia of Ambiguous Lineage, Chronic Myeloid Leukemia, Chronic Myelomonocytic LeukemiaArmsEBX-102, Placebo
3 · Its place in the literature

Who cites it

607 citing papers in PubMed, 3 syntheses or guidelines pooled it, 994 citations in OpenAlex.

  1. Pooled it
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  5. Enteral versus parenteral nutrition in auto-HCT: a randomized controlled trial on clinical outcomes and gut microbiome dynamics.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2025
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  9. Impact of a Purified Microbiome Therapeutic on Abundance of Antimicrobial Resistance Genes in Patients With Recurrent Clostridioides difficile Infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
    Trial
  10. Randomized Double-Blind Phase II Trial of Fecal Microbiota Transplantation Versus Placebo in Allogeneic Hematopoietic Cell Transplantation and AML.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Trial
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547 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ying TaurInfectious Disease Service, Department of Medicine, Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY, USA. taury@mskcc.org
Joao B Xavier
Lauren Lipuma
Carles Ubeda
Jenna Goldberg
Asia Gobourne
Yeon Joo Lee
Krista A Dubin
Nicholas D Socci
Agnes Viale
Miguel-Angel Perales
Robert R Jenq
Marcel R M van den Brink
Eric G Pamer
Memorial Sloan Kettering Cancer Center · USInstitut thématique Immunologie, inflammation, infectiologie et microbiologie · FRInfectious Disease Consultants · USKettering University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
TNF Mediated Immune Defense Against Listeria InfectionR01AI042135 · NIAID · YALE UNIVERSITY · PI PAMER, ERIC G. · 1998 to 2019
$7.3M
Engineering microbial social interactions: Towards new anti-biofilm therapiesDP2OD008440 · OD · SLOAN-KETTERING INST CAN RESEARCH · PI XAVIER, JOAO · 2011 to 2015
$2.9M
Effects of the Intestinal Microbiota on Infections During Bone Marrow TransplantK23AI095398 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI TAUR, YING · 2011 to 2015
$651k
NCI NIH HHS P30 CA008748NIAID NIH HHS 1K23 AI095398-01NIAID NIH HHS 1R01 AI42135NIAID NIH HHS K23 AI095398NIAID NIH HHS R01 AI042135NIGMS NIH HHS T32 GM007739NIH HHS DP2 OD008440
6 · The paper itself

Abstract

backgroundBacteremia is a frequent complication of allogeneic hematopoietic stem cell transplantation (allo-HSCT). It is unclear whether changes in the intestinal microbiota during allo-HSCT contribute to the development of bacteremia. We examined the microbiota of patients undergoing allo-HSCT, and correlated microbial shifts with the risk of bacteremia.

methodsFecal specimens were collected longitudinally from 94 patients undergoing allo-HSCT, from before transplant until 35 days after transplant. The intestinal microbiota was characterized by 454 pyrosequencing of the V1-V3 region of bacterial 16S ribosomal RNA genes. Microbial diversity was estimated by grouping sequences into operational taxonomic units and calculating the Shannon diversity index. Phylogenetic classification was obtained using the Ribosomal Database Project classifier. Associations of the microbiota with clinical predictors and outcomes were evaluated.

resultsDuring allo-HSCT, patients developed reduced diversity, with marked shifts in bacterial populations inhabiting the gut. Intestinal domination, defined as occupation of at least 30% of the microbiota by a single predominating bacterial taxon, occurred frequently. Commonly encountered dominating organisms included Enterococcus, Streptococcus, and various Proteobacteria. Enterococcal domination was increased 3-fold by metronidazole administration, whereas domination by Proteobacteria was reduced 10-fold by fluoroquinolone administration. As a predictor of outcomes, enterococcal domination increased the risk of Vancomycin-resistant Enterococcus bacteremia 9-fold, and proteobacterial domination increased the risk of gram-negative rod bacteremia 5-fold.

conclusionsDuring allo-HSCT, the diversity and stability of the intestinal flora are disrupted, resulting in domination by bacteria associated with subsequent bacteremia. Assessment of fecal microbiota identifies patients at highest risk for bloodstream infection during allo-HCST.

Indexed as

AdultAgedBacteremiaBiodiversityDNA, BacterialDNA, RibosomalFecesFemaleHematopoietic Stem Cell TransplantationHumansLongitudinal StudiesMaleMiddle AgedPhylogenyRisk FactorsRNA, Ribosomal, 16SDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID22718773
PMCPMC3657523
OpenAlexW2139284253

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.