Evidence map›Paper›PMID 22718628›Full record

ArticleBiological chemistry2012

Characterization of RNA damage under oxidative stress in Escherichia coli.

Min Liu, Xin Gong, Ravi Kumar Alluri, Jinhua Wu, Tene' Sablo, Zhongwei Li

Open access · greenAbstract read
In one paragraph

Article in Biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 95 citations in OpenAlex.

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  11. At the Crossroad of Nucleotide Dynamics and Protein Synthesis in Bacteria.Microbiology and molecular biology reviews : MMBR · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Min LiuDepartment of Biomedical Science, Charles E. Schmidt College of Medicine, Florida Atlantic University, 777 Glades Road, Boca Raton, FL 33431, USA.
Xin Gong
Ravi Kumar Alluri
Jinhua Wu
Tene' Sablo
Zhongwei Li
Florida Atlantic University · US

Funding

MBRS Support of Continuous Research Excellence at FAUS06GM073621 · NIGMS · FLORIDA ATLANTIC UNIVERSITY · PI NARAYANAN, RAMASWAMY · 2005 to 2008
$3.4M
RNA quality control against oxidative damageR15GM097693 · NIGMS · FLORIDA ATLANTIC UNIVERSITY · PI LI, ZHONGWEI · 2011 to 2011
$318k
NIGMS NIH HHS GM097693NIGMS NIH HHS R15 GM097693NIGMS NIH HHS S06 GM073621
6 · The paper itself

Abstract

We have examined the level of 8-hydroxyguanosine (8-oxo-G), an oxidized form of guanosine, in RNA in Escherichia coli under normal and oxidative stress conditions. The level of 8-oxo-G in RNA rises rapidly and remains high for hours in response to hydrogen peroxide (H₂O₂) challenge in a dose-dependent manner. H₂O₂ induced elevation of 8-oxo-G content is much higher in RNA than that of 8-hydroxydeoxyguanosine (8-oxo-dG) in DNA. Under normal conditions, the 8-oxo-G level is low in RNA isolated from the ribosome and it is nearly three times higher in non-ribosomal RNAs. In contrast, 8-oxo-G generated by a short exposure to H₂O₂ is almost equally distributed in various RNA species, suggesting that although ribosomal RNAs are normally less oxidized, they are not protected against exogenous H₂O₂. Interestingly, highly folded RNA is not protected from oxidation because 8-oxo-G generated by H₂O₂ treatment in vitro increases to approximately the same levels in tRNA and rRNA in both native and denatured forms. Lastly, increased RNA oxidation is closely associated with cell death by oxidative stress. Our data suggests that RNA is a primary target for reactive oxygen species and RNA oxidation is part of the paradox that cells have to deal with under oxidative stress.

Indexed as

Oxidative Stress8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNA, BacterialEscherichia coliHydrogen PeroxideNucleic Acid ConformationOxidation-ReductionRNA, Bacterial8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNA, BacterialHydrogen PeroxideRNA, Bacterial

Identifiers

PMID22718628
PMCPMC3404489
OpenAlexW2021395341

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.