Evidence map›Paper›PMID 22718126›Full record

ArticleClinical and vaccine immunology : CVI2012

Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig.

Midori Kato-Maeda, Crystal A Shanley, David Ackart, Leah G Jarlsberg, Shaobin Shang, Andres Obregon-Henao, Marisabel Harton, Randall J Basaraba, Marcela Henao-Tamayo, Joyce C Barrozo and 9 more

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Modern Beijing sublineage ofEmerging microbes & infections · 2022
    Article
  9. Article
  10. Article
  11. Extremely lethal and hypervirulentEmerging microbes & infections · 2021
    Article
  12. Review
  13. Article
  14. One Size Fits All? Not inFrontiers in cellular and infection microbiology · 2021
    Review
  15. Distribution and Frequency ofInfection and drug resistance · 2020
    Article
  16. Molecular Analysis ofJournal of epidemiology and global health · 2019
    Article
  17. Article
  18. Infectivity ofBioMed research international · 2019
    Article
  19. Regulatory T Cells inFrontiers in immunology · 2019
    Review
  20. Comparative Study of the Molecular Basis of Pathogenicity ofInternational journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Midori Kato-MaedaCurry International Tuberculosis Center, Division of Pulmonary and Critical Care Medicine, University of California, San Francisco, San Francisco, California, USA. midori.kato-maeda@ucsf.edu
Crystal A Shanley
David Ackart
Leah G Jarlsberg
Shaobin Shang
Andres Obregon-Henao
Marisabel Harton
Randall J Basaraba
Marcela Henao-Tamayo
Joyce C Barrozo
Jordan Rose
L Masae Kawamura
Mireia Coscolla
Viacheslav Y Fofanov
Heather Koshinsky
Sebastien Gagneux
Philip C Hopewell
Diane J Ordway
Ian M Orme
Colorado State University · USUniversity of California, San Francisco · USEureka Genomics (United States) · USSan Francisco Department of Public Health · USSwiss Tropical and Public Health Institute · CHUniversity of Basel · CH

Funding

POPULATION-BASED MOLECULAR EPIDEMIOLOGY OF TUBERCULOSISR01AI034238 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOPEWELL, PHILIP C · 1993 to 2010
$9.3M
Response Therapies for MDR-TBU01AI070456 · NIAID · COLORADO STATE UNIVERSITY · PI ORME, IAN M · 2006 to 2010
$6.4M
Mycobacterium tuberculosis antigen diversityR01AI090928 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ERNST, JOEL D., GAGNEUX, SEBASTIEN · 2010 to 2014
$3.2M
Immune modulation by highly virulent clinical isolates of M.tuberculosisDP2OD006450 · OD · COLORADO STATE UNIVERSITY · PI ORDWAY, DIANE JOYCE · 2009 to 2009
$2.0M
Virulence of MDR-TB strainsR21AI092002 · NIAID · COLORADO STATE UNIVERSITY · PI ORME, IAN M · 2012 to 2013
$408k
Induction of regulatory T cells by highly virulent isolates of M.tuberculosisR21AI081959 · NIAID · COLORADO STATE UNIVERSITY · PI ORDWAY, DIANE JOYCE · 2010 to 2011
$402k
Prevention of oxidative stress decreases persistence of drug tolerant M. TubercuR21AI083856 · NIAID · COLORADO STATE UNIVERSITY · PI BASARABA, RANDALL J · 2009 to 2010
$399k
NIAID NIH HHS AI034238NIAID NIH HHS AI070456NIAID NIH HHS AI081959NIAID NIH HHS AI083856NIAID NIH HHS AI090928NIAID NIH HHS AI092002NIAID NIH HHS R01 AI034238NIAID NIH HHS R01 AI090928NIAID NIH HHS R21 AI081959NIAID NIH HHS R21 AI083856NIAID NIH HHS R21 AI092002NIAID NIH HHS U01 AI070456NIH HHS DP2 OD006450
6 · The paper itself

Abstract

The Beijing family of Mycobacterium tuberculosis strains is part of lineage 2 (also known as the East Asian lineage). In clinical studies, we have observed that isolates from the sublineage RD207 of lineage 2 were more readily transmitted among humans. To investigate the basis for this difference, we tested representative strains with the characteristic Beijing spoligotype from four of the five sublineages of lineage 2 in the guinea pig model and subjected these strains to comparative whole-genome sequencing. The results of these studies showed that all of the clinical strains were capable of growing and causing lung pathology in guinea pigs after low-dose aerosol exposure. Differences between the abilities of the four sublineages to grow in the lungs of these animals were not overt, but members of RD207 were significantly more pathogenic, resulting in severe lung damage. The RD207 strains also induced much higher levels of markers associated with regulatory T cells and showed a significant loss of activated T cells in the lungs over the course of the infections. Whole-genome sequencing of the strains revealed mutations specific for RD207 which may explain this difference. Based on these data, we hypothesize that the sublineages of M. tuberculosis are associated with distinct pathological and clinical phenotypes and that these differences influence the transmissibility of particular M. tuberculosis strains in human populations.

Indexed as

AnimalsDisease Models, AnimalFemaleGenome, BacterialGenotypeGuinea PigsHistocytochemistryHumansLungMolecular TypingMycobacterium tuberculosisSequence Analysis, DNATuberculosisVirulence

Identifiers

PMID22718126
PMCPMC3416080
OpenAlexW2156298917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.