Evidence map›Paper›PMID 22718019›Full record

ArticleJournal of human genetics2012

USH1K, a novel locus for type I Usher syndrome, maps to chromosome 10p11.21-q21.1.

Thomas J Jaworek, Rashid Bhatti, Noreen Latief, Shaheen N Khan, Saima Riazuddin, Zubair M Ahmed

Open access · bronzeAbstract read
In one paragraph

Article in Journal of human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Usher Syndrome.Audiology research · 2022
    Review
  2. Review
  3. Usher Syndrome in the Inner Ear: Etiologies and Advances in Gene Therapy.International journal of molecular sciences · 2021
    Review
  4. Article
  5. Review
  6. Article
  7. Heterogeneous network embedding for identifying symptom candidate genes.Journal of the American Medical Informatics Association : JAMIA · 2018
    Article
  8. Article
  9. Review
  10. SHIELD: an integrative gene expression database for inner ear research.Database : the journal of biological databases and curation · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Genetic analysis through OtoSeq of Pakistani families segregating prelingual hearing loss.Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery · 2013
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Thomas J JaworekDivision of Pediatric Ophthalmology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Rashid Bhatti
Noreen Latief
Shaheen N Khan
Saima Riazuddin
Zubair M Ahmed
Centre of Excellence in Molecular Biology · PKCincinnati Children's Hospital Medical Center · USHospital Research Foundation · AUUniversity of Cincinnati Medical Center · US

Funding

Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZ01DC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS BAER · 1997 to 2008
$7.2M
Identifying Genes for Non-syndromic Recessive Deafness-A Collaborative StudyR01DC011803 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI RIAZUDDIN, SAIMA · 2012 to 2016
$1.6M
MOLECULAR GENETICS OF USHER SYNDROME TYPE IR00DC009287 · NIDCD · CINCINNATI CHILDRENS HOSP MED CTR · PI AHMED, ZUBAIR M. · 2009 to 2011
$732k
SPEECH AND HEARING SCIENCEST32DC000039 · NIDCD · CUNY GRADUATE SCH AND UNIV CTR · PI SCHWARTZ, RICHARD G · 1992 to 2002
$429k
Intramural NIH HHS Z01 DC000039NIDCD NIH HHS R00 DC009287NIDCD NIH HHS R01 DC011803NIDCD NIH HHS T32 DC000039
6 · The paper itself

Abstract

We ascertained two large Pakistani consanguineous families (PKDF231 and PKDF608) segregating profound hearing loss, vestibular dysfunction, and retinitis pigmentosa; the defining features of Usher syndrome type 1 (USH1). To date, seven USH1 loci have been reported. Here, we map a novel locus, USH1K, on chromosome 10p11.21-q21.1. In family PKDF231, we performed a genome-wide linkage screen and found a region of homozygosity shared among the affected individuals at chromosome 10p11.21-q21.1. Meiotic recombination events in family PKDF231 define a critical interval of 11.74 cM (20.20 Mb) bounded by markers D10S1780 (63.83 cM) and D10S546 (75.57 cM). Affected individuals of family PKDF608 were also homozygous for chromosome 10p11.21-q21.1-linked STR markers. Of the 85 genes within the linkage interval, PCDH15, GJD4, FZD4, RET and LRRC18 were sequenced in both families, but no potential pathogenic mutation was identified. The USH1K locus overlaps the non-syndromic deafness locus DFNB33 raising the possibility that the two disorders may be caused by allelic mutations.

Indexed as

Genetic LociAdolescentAdultAllelesCadherin Related ProteinsCadherinsChildChromosome MappingChromosomes, Human, Pair 10FemaleGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyHearing Loss, SensorineuralHomozygoteHumansCadherin Related ProteinsCadherinsCDHR15, human

Identifiers

PMID22718019
PMCPMC3596105
OpenAlexW2043234119

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.