Evidence map›Paper›PMID 22716912›Full record

ArticleACS chemical biology2012

Sequence- and species-dependence of proteasomal processivity.

Daniel A Kraut, Eitan Israeli, Erin K Schrader, Ashwini Patil, Kenta Nakai, Dhaval Nanavati, Tomonao Inobe, Andreas Matouschek

Abstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Real-time capture of σNature communications · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Proteasomal conformation controls unfolding ability.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Mechanisms of substrate recognition by the 26S proteasome.Current opinion in structural biology · 2021
    Review
  12. Review
  13. Mode of targeting to the proteasome determines GFP fate.The Journal of biological chemistry · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Structure and Function of the 26S Proteasome.Annual review of biochemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel A KrautDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Eitan Israeli
Erin K Schrader
Ashwini Patil
Kenta Nakai
Dhaval Nanavati
Tomonao Inobe
Andreas Matouschek

Funding

TRANS-NETWORK PROJECTSU54CA143869 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI O'HALLORAN, THOMAS V · 2009 to 2013
$12.8M
Protein unfolding in a physiological systemR01GM063004 · NIGMS · NORTHWESTERN UNIVERSITY · PI MATOUSCHEK, ANDREAS · 2001 to 2012
$2.7M
NCI NIH HHS U54 CA143869NIGMS NIH HHS R01 GM063004NIGMS NIH HHS R01GM63004
6 · The paper itself

Abstract

The proteasome is the degradation machine at the center of the ubiquitin-proteasome system and controls the concentrations of many proteins in eukaryotes. It is highly processive so that substrates are degraded completely into small peptides, avoiding the formation of potentially toxic fragments. Nonetheless, some proteins are incompletely degraded, indicating the existence of factors that influence proteasomal processivity. We have quantified proteasomal processivity and determined the underlying rates of substrate degradation and release. We find that processivity increases with species complexity over a 5-fold range between yeast and mammalian proteasome, and the effect is due to slower but more persistent degradation by proteasomes from more complex organisms. A sequence stretch that has been implicated in causing incomplete degradation, the glycine-rich region of the NFκB subunit p105, reduces the proteasome's ability to unfold its substrate, and polyglutamine repeats such as found in Huntington's disease reduce the processivity of the proteasome in a length-dependent manner.

Indexed as

AnimalsEscherichia coliGlycineHumansHydrolysisKineticsModels, BiologicalNF-kappa BPeptidesProteasome Endopeptidase ComplexProtein DenaturationProtein FoldingRabbitsSpecies SpecificityGlycineNF-kappa BPeptidespolyglutamineProteasome Endopeptidase Complex

Identifiers

PMID22716912
PMCPMC3423507

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.