Evidence map›Paper›PMID 22715043›Full record

ArticleThe Plant cell2012

A PP6-type phosphatase holoenzyme directly regulates PIN phosphorylation and auxin efflux in Arabidopsis.

Mingqiu Dai, Chen Zhang, Urszula Kania, Fang Chen, Qin Xue, Tyra McCray, Gang Li, Genji Qin, Michelle Wakeley, William Terzaghi and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Hyperoside, a flavonoid, inducesScience advances · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Auxin Transporters-A Biochemical View.Cold Spring Harbor perspectives in biology · 2022
    Review
  9. Review
  10. Review
  11. International journal of molecular sciences · 2021
    Article
  12. Review
  13. Review
  14. Integrated Bioinformatics Analyses ofFrontiers in plant science · 2021
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 4 countries.

Mingqiu DaiDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Conecticut 06520-8104, USA.
Chen Zhang
Urszula Kania
Fang Chen
Qin Xue
Tyra McCray
Gang Li
Genji Qin
Michelle Wakeley
William Terzaghi
Jianmin Wan
Yunde Zhao
Jian Xu
Jirí Friml
Xing Wang Deng
Haiyang Wang
Yale University · USUniversity of California, San Diego · USBeijing Normal University · CNGhent University · BEHuazhong Agricultural University · CNInstitute of Crop Sciences · CNNational University of Singapore · SGVIB-UGent Center for Plant Systems Biology · BE

Funding

Analysis of a Light-Regulated Development SwitchR37GM047850 · NIGMS · YALE UNIVERSITY · PI DENG, XING WANG · 2004 to 2013
$5.7M
LIGHT SIGNAL TRANDUCTION IN ARABIDOPSISR01GM047850 · NIGMS · YALE UNIVERSITY · PI WEI, NING · 1996 to 2018
$4.1M
LIGHT SIGNAL TRANSDUCTION IN ARABIDOPSISR29GM047850 · NIGMS · YALE UNIVERSITY · PI DENG, XING WANG · 1992 to 1995
–
NIGMS NIH HHS GM47850NIGMS NIH HHS R01 GM047850NIGMS NIH HHS R37 GM047850
6 · The paper itself

Abstract

The directional transport of the phytohormone auxin depends on the phosphorylation status and polar localization of PIN-FORMED (PIN) auxin efflux proteins. While PINIOD (PID) kinase is directly involved in the phosphorylation of PIN proteins, the phosphatase holoenzyme complexes that dephosphorylate PIN proteins remain elusive. Here, we demonstrate that mutations simultaneously disrupting the function of Arabidopsis thaliana FyPP1 (for Phytochrome-associated serine/threonine protein phosphatase1) and FyPP3, two homologous genes encoding the catalytic subunits of protein phosphatase6 (PP6), cause elevated accumulation of phosphorylated PIN proteins, correlating with a basal-to-apical shift in subcellular PIN localization. The changes in PIN polarity result in increased root basipetal auxin transport and severe defects, including shorter roots, fewer lateral roots, defective columella cells, root meristem collapse, abnormal cotyledons (small, cup-shaped, or fused cotyledons), and altered leaf venation. Our molecular, biochemical, and genetic data support the notion that FyPP1/3, SAL (for SAPS DOMAIN-LIKE), and PP2AA proteins (RCN1 [for ROOTS CURL IN NAPHTHYLPHTHALAMIC ACID1] or PP2AA1, PP2AA2, and PP2AA3) physically interact to form a novel PP6-type heterotrimeric holoenzyme complex. We also show that FyPP1/3, SAL, and PP2AA interact with a subset of PIN proteins and that for SAL the strength of the interaction depends on the PIN phosphorylation status. Thus, an Arabidopsis PP6-type phosphatase holoenzyme acts antagonistically with PID to direct auxin transport polarity and plant development by directly regulating PIN phosphorylation.

Indexed as

ArabidopsisArabidopsis ProteinsBiological TransportCotyledonGene Expression Regulation, PlantHoloenzymesIndoleacetic AcidsMembrane Transport ProteinsMolecular Sequence DataMutationNucleotidasesPhenotypePhosphoprotein PhosphatasesPhosphoric Monoester HydrolasesPhosphorylationPlant DevelopmentArabidopsis ProteinsAT5G57090 protein, ArabidopsisAtFyPP3 protein, ArabidopsisFyPP1 protein, ArabidopsisHoloenzymesIndoleacetic Acidsinositol-1,4-bisphosphate 1-phosphataseMembrane Transport ProteinsNucleotidasesPhosphoprotein PhosphatasesPhosphoric Monoester HydrolasesPIN1 protein, ArabidopsisPIN3 protein, ArabidopsisPIN4 protein, ArabidopsisProtein Phosphatase 2RCN1 protein, Arabidopsis

Identifiers

PMID22715043
PMCPMC3406902
OpenAlexW2165578605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.