Evidence map›Paper›PMID 22712476›Full record

ArticleBMC cell biology2012

Identification of novel mitosis regulators through data mining with human centromere/kinetochore proteins as group queries.

Aaron R Tipton, Kexi Wang, Peter Oladimeji, Shermeen Sufi, Zhidong Gu, Song-Tao Liu

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Spatiotemporal regulation of MELK during mitosis.Frontiers in cell and developmental biology · 2024
    Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. p31Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. The conserved AAA-ATPase PCH-2Molecular biology of the cell · 2020
    Article
  13. Licensing meiotic progression†.Biology of reproduction · 2020
    Article
  14. Article
  15. Review
  16. Insights into a Crucial Role of TRIP13 in Human Cancer.Computational and structural biotechnology journal · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Aaron R TiptonDepartment of Biological Sciences, University of Toledo, Toledo, OH 43606, USA.
Kexi Wang
Peter Oladimeji
Shermeen Sufi
Zhidong Gu
Song-Tao Liu
University of Toledo · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProteins functioning in the same biological pathway tend to be transcriptionally co-regulated or form protein-protein interactions (PPI). Multiple spatially and temporally regulated events are coordinated during mitosis to achieve faithful chromosome segregation. The molecular players participating in mitosis regulation are still being unravelled experimentally or using in silico methods.

resultsAn extensive literature review has led to a compilation of 196 human centromere/kinetochore proteins, all with experimental evidence supporting the subcellular localization. Sixty-four were designated as "core" centromere/kinetochore components based on peak expression and/or well-characterized functions during mitosis. By interrogating and integrating online resources, we have mined for genes/proteins that display transcriptional co-expression or PPI with the core centromere/kinetochore components. Top-ranked hubs in either co-expression or PPI network are not only enriched with known mitosis regulators, but also contain candidates whose mitotic functions are not yet established. Experimental validation found that KIAA1377 is a novel centrosomal protein that also associates with microtubules and midbody; while TRIP13 is a novel kinetochore protein and directly interacts with mitotic checkpoint silencing protein p31(comet).

conclusionsTranscriptional co-expression and PPI network analyses with known human centromere/kinetochore proteins as a query group help identify novel potential mitosis regulators.

Indexed as

Data MiningAdaptor Proteins, Signal TransducingATPases Associated with Diverse Cellular ActivitiesCarrier ProteinsCell Cycle ProteinsCentromereChromosomal Proteins, Non-HistoneHumansIntracellular Signaling Peptides and ProteinsKinetochoresMicrotubulesMitosis ModulatorsM Phase Cell Cycle CheckpointsNuclear ProteinsProtein Interaction MappingTranscription, GeneticAdaptor Proteins, Signal TransducingATPases Associated with Diverse Cellular ActivitiesCarrier ProteinsCell Cycle ProteinsCEP126 protein, humanChromosomal Proteins, Non-HistoneIntracellular Signaling Peptides and ProteinsMAD2L1BP protein, humanMitosis ModulatorsNuclear ProteinsTRIP13 protein, human

Identifiers

PMID22712476
PMCPMC3419070
OpenAlexW1977614968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.