Evidence map›Paper›PMID 22711344›Full record

ArticleJournal of medical virology2012

In vitro replication phenotype of a novel (-1G) hepatitis B virus variant associated with HIV co-infection.

Liza M Cabuang, Tim Shaw, Margaret Littlejohn, Danni Colledge, Vitini Sozzi, Sally Soppe, Nadia Warner, Alex Thompson, Scott Preiss, Natasha Lam and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. TheJournal of virology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Liza M CabuangVictorian Infectious Diseases Reference Laboratory, North Melbourne, Victoria, Australia.
Tim Shaw
Margaret Littlejohn
Danni Colledge
Vitini Sozzi
Sally Soppe
Nadia Warner
Alex Thompson
Scott Preiss
Natasha Lam
Renae Walsh
Sharon R Lewin
Chloe L Thio
Gail Matthews
Stephen A Locarnini
Peter A Revill
Victorian Infectious Diseases Reference Laboratory · AUJohns Hopkins Hospital · USSt Vincent's Hospital Sydney · AUThe Alfred Hospital · AU

Funding

Liver Disease and HIV-HBV Coinfection in the HAART eraR01AI060449 · NIAID · JOHNS HOPKINS UNIVERSITY · PI THIO, CHLOE L · 2004 to 2008
$3.0M
Liver Disease and HIV-HBV co-infection in the HAART eraR56AI060449 · NIAID · JOHNS HOPKINS UNIVERSITY · PI THIO, CHLOE L · 2010 to 2010
$306k
NIAID NIH HHS AI060449NIAID NIH HHS R01 AI060449NIAID NIH HHS R56 AI060449
6 · The paper itself

Abstract

The -1G mutant HBV is more prevalent in individuals co-infected with HIV/HBV than in individuals infected with HBV alone and in some cases is the dominant virus in circulation. This mutant is created by the deletion of a dGMP (-1G) from the guanine rich homopolymer sequence located at nts 2,085-2,090 (numbering from EcoRI site as position 1) in the HBV core gene. This deletion causes a frameshift generating a premature stop codon at (64) Asn in the HBV core gene (codon 93 in the precore gene), that truncates the precore protein, precursor of the secreted hepatitis B "e" antigen (HBeAg), and the core protein which forms the viral nucleocapsid. However, the replication phenotype of the -1G mutant HBV is unknown. An in vitro cell culture model in which hepatoma cells were transiently transfected with infectious cDNAs was used to show that the -1G mutant HBV is incapable of autonomous replication and, as expected, replication was restored to wild-type (wt) levels by supplying HBV core protein in trans. Although the -1G mutation had no deleterious effect on intracellular HBV-DNA levels, high levels of -1G mutant HBV relative to wt HBV reduced virus secretion and HBeAg secretion relative to empty vector controls. Importantly, the -1G mutant HBV also caused intracellular retention of truncated precore protein in the endoplasmic reticulum (ER) and Golgi apparatus. Together, these effects may be contributing to the increased pathology observed in the setting of HIV/HBV co-infection.

Indexed as

CoinfectionGenetic VariationVirus ReplicationCell Line, TumorDNA, ViralHepatitis BHepatitis B e AntigensHepatitis B virusHIV InfectionsHumansMutationPhenotypeDNA, ViralHepatitis B e Antigens

Identifiers

PMID22711344
PMCPMC3538154
OpenAlexW2015839125

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.