Evidence map›Paper›PMID 22709958›Full record

ArticleVirology2012

The roles of SaPI1 proteins gp7 (CpmA) and gp6 (CpmB) in capsid size determination and helper phage interference.

Priyadarshan K Damle, Erin A Wall, Michael S Spilman, Altaira D Dearborn, Geeta Ram, Richard P Novick, Terje Dokland, Gail E Christie

Abstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Capsid redirection mechanism of thePhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  5. Genetics, ecology and evolution of phage satellites.Nature reviews. Microbiology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. AeLife · 2024
    Article
  11. AbioRxiv : the preprint server for biology · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Priyadarshan K DamleDepartment of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, Richmond, VA 23298-0678, USA. damlepk@vcu.edu
Erin A Wall
Michael S Spilman
Altaira D Dearborn
Geeta Ram
Richard P Novick
Terje Dokland
Gail E Christie

Funding

Structural basis for pathogenicity island mobilization in S. aureusR01AI083255 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2009 to 2023
$5.6M
Molecular Biology of TSST-1 and other superantigen toxinsR01AI022159 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1985 to 2014
$2.6M
Helper Phage Mobilization of Staphylococcal Enterotoxin GenesR21AI067654 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHRISTIE, GAIL E · 2006 to 2007
$399k
Helper phage mobilization of S. aureus superantigen pathogenicity islandsR56AI081837 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHRISTIE, GAIL E · 2010 to 2010
$372k
NIAID NIH HHS R01 AI022159NIAID NIH HHS R01AI022159NIAID NIH HHS R01 AI083255NIAID NIH HHS R01AI083255NIAID NIH HHS R21 AI067654NIAID NIH HHS R21AI067654NIAID NIH HHS R56 AI081837NIAID NIH HHS R56AI081837
6 · The paper itself

Abstract

SaPIs are molecular pirates that exploit helper bacteriophages for their own high frequency mobilization. One striking feature of helper exploitation by SaPIs is redirection of the phage capsid assembly pathway to produce smaller phage-like particles with T=4 icosahedral symmetry rather than T=7 bacteriophage capsids. Small capsids can accommodate the SaPI genome but not that of the helper phage, leading to interference with helper propagation. Previous studies identified two proteins encoded by the prototype element SaPI1, gp6 and gp7, in SaPI1 procapsids but not in mature SaPI1 particles. Dimers of gp6 form an internal scaffold, aiding fidelity of small capsid assembly. Here we show that both SaPI1 gp6 (CpmB) and gp7 (CpmA) are necessary and sufficient to direct small capsid formation. Surprisingly, failure to form small capsids did not restore wild-type levels of helper phage growth, suggesting an additional role for these SaPI1 proteins in phage interference.

Indexed as

CapsidCapsid ProteinsCryoelectron MicroscopyGenomic IslandsHelper VirusesStaphylococcus aureusStaphylococcus PhagesVirus AssemblyCapsid Proteins

Identifiers

PMID22709958
PMCPMC3423473

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.