Evidence map›Paper›PMID 22707144›Full record

ArticleMolecular biology reports2012

Characterization and functional analysis of the genes encoding 1-deoxy-D-xylulose-5-phosphate reductoisomerase and 1-deoxy-D-xylulose-5-phosphate synthase, the two enzymes in the MEP pathway, from Amomum villosum Lour.

Jinfen Yang, Megha Nath Adhikari, Hui Liu, Hui Xu, Guozhen He, Ruoting Zhan, Jieshu Wei, Weiwen Chen

Abstract read
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In one paragraph

Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Biosynthesis of Camphane Volatile Terpenes inPlants (Basel, Switzerland) · 2025
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  4. Functional Characterization ofInternational journal of molecular sciences · 2024
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  6. Differential roles ofFrontiers in plant science · 2023
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  12. Article
  13. Overexpression ofInternational journal of molecular sciences · 2019
    Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jinfen YangResearch Center of Chinese Herbal Resource Science and Engineering, Guangzhou University of Chinese Medicine, 232 Waihuandong Road, Guangzhou Higher Education Mega Center, Guangzhou 510006, People's Republic of China.
Megha Nath Adhikari
Hui Liu
Hui Xu
Guozhen He
Ruoting Zhan
Jieshu Wei
Weiwen Chen
Guangzhou University of Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A DXR gene, AvDXR (GenBank accession no. FJ459894), and a DXS gene, AvDXS (GenBank accession no. FJ455512), were isolated from the leaves of Amomum villosum, one of the most well-known and authentic herbs in South China. The 1,749-bp full-length cDNA of AvDXR encoded a peptide of 472 amino acids, and the 2,347-bp full-length cDNA of AvDXS encoded a peptide of 715 amino acids. The deduced amino acid sequences of the AvDXR and AvDXS proteins share high homology with DXRs and DXSs from other plant species, and AvDXS belongs to class 1 plant DXS. The characterization based on bioinformatic analysis indicated that the AvDXR and AvDXS encoded functional proteins as DXR and DXS, respectively. The functional color assay in Escherichia coli with pAC-BETA implied that AvDXR and AvDXS encoded functional proteins that manipulated the biosynthesis of isoprenoid precursors. Both AvDXR and AvDXS were expressed extensively in the leaves, stems, roots, pericarps and seeds of A. villosum. AvDXS expression was similar in all tissues investigated, whereas higher levels of AvDXR were observed in the fruits, the main part for the accumulation of volatile oil in this plant. AvDXR was transformed into tobacco to confirm its function further. Overexpression of AvDXR in transgenic T1 generation tobacco increased DXR activity, photosynthetic pigment content and volatile isoprenoid components, and the increase of photosynthetic pigment content was consistent with the AvDXR transcription level. This study demonstrated that AvDXR plays important role in isoprenoid biosynthesis and it is useful for metabolic engineering.

Indexed as

Aldose-Ketose IsomerasesAmomumCloning, MolecularErythritolGene Expression ProfilingGene Expression Regulation, PlantMetabolic Networks and PathwaysMultienzyme ComplexesNicotianaOrgan SpecificityOxidoreductasesPigments, BiologicalPlants, Genetically ModifiedSugar PhosphatesTerpenesTransferases1-deoxy-D-xylulose 5-phosphate reductoisomerase2-C-methylerythritol 4-phosphateAldose-Ketose Isomerasesdeoxyxylulose-5-phosphate synthaseErythritolMultienzyme ComplexesOxidoreductasesPigments, BiologicalSugar PhosphatesTerpenesTransferases

Identifiers

PMID22707144
OpenAlexW1970024664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.