Evidence map›Paper›PMID 22705971›Full record

ArticleVirus research2012

The HIV-1 matrix protein does not interact directly with the protein interactive domain of AP-3δ.

Sampson K Kyere, Peter Y Mercredi, Xinhong Dong, Paul Spearman, Michael F Summers

Open access · greenAbstract read
In one paragraph

Article in Virus research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Membrane interaction of retroviral Gag proteins.Frontiers in microbiology · 2014
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sampson K KyereHoward Hughes Medical Institute, Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore, MD 21250, USA.
Peter Y Mercredi
Xinhong Dong
Paul Spearman
Michael F Summers
Emory University · USHoward Hughes Medical Institute · USUniversity of Maryland, Baltimore County · US

Funding

EXPAND PARTICIPATION BY MINORITIES IN BIOMEDICAL SCIENCER25GM055036 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SUMMERS, MICHAEL FINLEY · 1996 to 2021
$16.9M
RESEARCH SUPPORT FOR BIOMEDICAL CAREERS AT CCNYR25GM056833 · NIGMS · CITY COLLEGE OF NEW YORK · PI STEINBERG, MARK L · 2000 to 2019
$9.9M
NMR STUDIES OF HIV1 PROTEINSR37AI030917 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SUMMERS, MICHAEL FINLEY · 1997 to 2015
$4.9M
Viral and Cellullar Determinants of HIV-1 AssemblyR01AI040338 · NIAID · VANDERBILT UNIVERSITY · PI SPEARMAN, PAUL W. · 2001 to 2010
$3.0M
NMR Studies of Protein Interactions in HIV-1 AssemblyF31GM076979 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI KYERE, SAMPSON K · 2006 to 2009
$104k
NMR STUDIES OF HIV-1 PROTEINSR01AI030917 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SUMMERS, MICHAEL F. · 1991 to 1996
–
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI040338NIAID NIH HHS R01-AI30917NIAID NIH HHS R01-AI40338NIAID NIH HHS R37 AI030917NIGMS NIH HHS F31-GM076979NIGMS NIH HHS R25 GM055036NIGMS NIH HHS R25 GM056833
6 · The paper itself

Abstract

During the late phase of the Human Immunodeficiency Virus Type-1 (HIV-1) replication cycle, viral Gag proteins and the intact RNA genome are trafficked to specific sub-cellular membranes where virus assembly and budding occurs. Targeting to the plasma membranes of T cells and macrophages is mediated by interactions between the N-terminal matrix (MA) domain of Gag and cellular phosphatidylinositol-4,5-bisphosphate [PI(4,5)P(2)] molecules. However, in macrophages and dendritic cells, a subset of Gag proteins appears to be targeted to tetraspanin enriched viral compartments, a process that appears to be mediated by MA interactions with the Delta subunit of the cellular Adaptor Protein AP-3 (AP-3δ). We cloned, overexpressed and purified the protein interactive domain of AP-3δ and probed for MA binding by NMR. Unexpectedly, no evidence of binding was observed in these in vitro experiments, even at relatively high protein concentrations (200μM), suggesting that AP-3δ plays an alternative role in HIV-1 assembly.

Indexed as

Protein Interaction MappingVirus AssemblyAdaptor Protein Complex 3Adaptor Protein Complex delta SubunitsCloning, Moleculargag Gene Products, Human Immunodeficiency VirusGene ExpressionHIV-1HIV AntigensHumansMagnetic Resonance SpectroscopyProtein BindingAdaptor Protein Complex 3Adaptor Protein Complex delta SubunitsAP3D1 protein, humangag Gene Products, Human Immunodeficiency VirusHIV Antigensp17 protein, Human Immunodeficiency Virus Type 1

Identifiers

PMID22705971
PMCPMC3469251
OpenAlexW2024053451

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.