Evidence map›Paper›PMID 22705207›Full record

ArticleStructure (London, England : 1993)2012

Structure and proposed mechanism for the pH-sensing Helicobacter pylori chemoreceptor TlpB.

Emily Goers Sweeney, J Nathan Henderson, John Goers, Christopher Wreden, Kevin G Hicks, Jeneva K Foster, Raghuveer Parthasarathy, S James Remington, Karen Guillemin

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Insights into Chemoreceptor MCP2201-Sensing D-Malate.International journal of molecular sciences · 2025
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  6. Bacterial flagella hijack type IV pili proteins to control motility.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  9. Review
  10. Bacterial chemotaxis in human diseases.Trends in microbiology · 2023
    Review
  11. Review
  12. Article
  13. Review
  14. Immunological Perspective:Mediators of inflammation · 2022
    Review
  15. Article
  16. Biology · 2021
    Article
  17. Cytokinin Perception in Ancient Plants beyond Angiospermae.International journal of molecular sciences · 2021
    Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Emily Goers SweeneyInstitute of Molecular Biology, University of Oregon, Eugene, OR 97403, USA.
J Nathan Henderson
John Goers
Christopher Wreden
Kevin G Hicks
Jeneva K Foster
Raghuveer Parthasarathy
S James Remington
Karen Guillemin
University of Oregon · USCalifornia Polytechnic State University · US

Funding

Molecular and genetic analysis of the hielcobacter pylori virulence Factor CagAR01DK075667 · NIDDK · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 2007 to 2010
$1.1M
Mechanistic Investigations of Helicobacter pylori ChemotaxisF32AI091098 · NIAID · UNIVERSITY OF OREGON · PI SWEENEY, EMILY SARAH MARIE · 2010 to 2012
$153k
NIAID NIH HHS AI091098-02NIAID NIH HHS F32 AI091098NIDDK NIH HHS R01 DK075667
6 · The paper itself

Abstract

pH sensing is crucial for survival of most organisms, yet the molecular basis of such sensing is poorly understood. Here, we present an atomic resolution structure of the periplasmic portion of the acid-sensing chemoreceptor, TlpB, from the gastric pathogen Helicobacter pylori. The structure reveals a universal signaling fold, a PAS domain, with a molecule of urea bound with high affinity. Through biophysical, biochemical, and in vivo mutagenesis studies, we show that urea and the urea-binding site residues play critical roles in the ability of H. pylori to sense acid. Our signaling model predicts that protonation events at Asp114, affected by changes in pH, dictate the stability of TlpB through urea binding.

Indexed as

ProtonsAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayDimerizationEscherichia coliHelicobacter pyloriHydrogen-Ion ConcentrationModels, MolecularMolecular Sequence DataMutationPlasmidsProtein BindingProtein StabilityProtein Structure, SecondaryBacterial ProteinsProtonsReceptors, Cell SurfaceRecombinant ProteinsUrea

Identifiers

PMID22705207
PMCPMC3392440
OpenAlexW2065273285

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.