Evidence map›Paper›PMID 22705104›Full record

ArticleImmunity2012

Commensal bacteria calibrate the activation threshold of innate antiviral immunity.

Michael C Abt, Lisa C Osborne, Laurel A Monticelli, Travis A Doering, Theresa Alenghat, Gregory F Sonnenberg, Michael A Paley, Marcelo Antenus, Katie L Williams, Jan Erikson and 2 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05223114 (Airway Microbiome and Th17-mediated Inflammation in COPD Among HIV-infected Individuals in a Rural Ugandan Cohort), which is not on this map. Cited by 661 papers.

0numbers the graph read from it
0cells of the map it votes in
661citing papers in PubMed
21.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05223114 completednot on this mapstarted 2022, after this paper: background citation

Airway Microbiome and Th17-mediated Inflammation in COPD Among HIV-infected Individuals in a Rural Ugandan Cohort

TypeobservationalSponsorMakerere UniversityRan2022 to 2023Enrolled160ConditionsCOPD, HIV Infections, Respiratory DiseaseArmsNot applicable (N/A)
3 · Its place in the literature

Who cites it

661 citing papers in PubMed, 1,002 citations in OpenAlex.

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601 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Michael C AbtDepartment of Microbiology and Institute for Immunology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Lisa C Osborne
Laurel A Monticelli
Travis A Doering
Theresa Alenghat
Gregory F Sonnenberg
Michael A Paley
Marcelo Antenus
Katie L Williams
Jan Erikson
E John Wherry
David Artis
University of Pennsylvania · USThe Wistar Institute · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
Visualizing Effects of Costimulation on Antiviral ImmunityP01AI078897 · NIAID · HARVARD MEDICAL SCHOOL · PI SHARPE, ARLENE H. · 2008 to 2012
$12.1M
Regulation of protective immunity following enteric viral infectionU01AI095608 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID, SONNENBERG, GREGORY F · 2011 to 2025
$11.0M
The Impact of Bacterial Co-Infectin on Respiratory Virus-Specific T cell ResponseU19AI083022 · NIAID · WISTAR INSTITUTE · PI SHEN, HAO · 2009 to 2013
$10.7M
TRAINING IN VIROLOGYT32AI007324 · NIAID · WISTAR INSTITUTE · PI Paul Bates, Matthew D. Weitzman · 1989 to 2026
$6.8M
PARASITOLOGY: MODERN APPROACHEST32AI007532 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HERBERT, DE'BROSKI R · 1998 to 2022
$5.0M
Innate immunity and inflammation following helminth infectionR01AI074878 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2008 to 2019
$4.2M
Immuno-regulation of GI nematode infectionR01AI061570 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2004 to 2013
$4.1M
Regulation and function of innate lymphoid cells in the gutR01AI095466 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2011 to 2022
$3.7M
Regulation and function of innate lymphoid cells during influenza virus infectionR01AI102942 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2013 to 2017
$2.1M
RELM-alpha regulation of hookworm-induced lung inflammationR01AI091759 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI NAIR, MEERA GOH · 2011 to 2015
$2.0M
NCI NIH HHS 2-P30 CA016520NCI NIH HHS P30 CA016520NCRR NIH HHS T32 RR007063NCRR NIH HHS T32-RR007063NIAID NIH HHS AI061570NIAID NIH HHS AI071309NIAID NIH HHS AI074878NIAID NIH HHS AI077098NIAID NIH HHS AI078897NIAID NIH HHS AI083022NIAID NIH HHS AI087990NIAID NIH HHS AI091759NIAID NIH HHS AI095466NIAID NIH HHS AI095608NIAID NIH HHS HHSN266200500030CNIAID NIH HHS P01 AI078897NIAID NIH HHS R01 AI061570NIAID NIH HHS R01 AI071309NIAID NIH HHS R01 AI074878NIAID NIH HHS R01 AI091759NIAID NIH HHS R01 AI095466NIAID NIH HHS R01 AI102942NIAID NIH HHS R21 AI077098NIAID NIH HHS R21 AI083480NIAID NIH HHS R21 AI087990NIAID NIH HHS T32 AI007324NIAID NIH HHS T32-AI007324NIAID NIH HHS T32 AI007532NIAID NIH HHS T32-AI007532NIAID NIH HHS T32-AI05528NIAID NIH HHS U01 AI095608NIAID NIH HHS U19 AI083022NIDDK NIH HHS DK50306NIDDK NIH HHS K08 DK093784NIDDK NIH HHS K08-DK093784NIDDK NIH HHS P30 DK050306
6 · The paper itself

Abstract

Signals from commensal bacteria can influence immune cell development and susceptibility to infectious or inflammatory diseases. However, the mechanisms by which commensal bacteria regulate protective immunity after exposure to systemic pathogens remain poorly understood. Here, we demonstrate that antibiotic-treated (ABX) mice exhibit impaired innate and adaptive antiviral immune responses and substantially delayed viral clearance after exposure to systemic LCMV or mucosal influenza virus. Furthermore, ABX mice exhibited severe bronchiole epithelial degeneration and increased host mortality after influenza virus infection. Genome-wide transcriptional profiling of macrophages isolated from ABX mice revealed decreased expression of genes associated with antiviral immunity. Moreover, macrophages from ABX mice exhibited defective responses to type I and type II IFNs and impaired capacity to limit viral replication. Collectively, these data indicate that commensal-derived signals provide tonic immune stimulation that establishes the activation threshold of the innate immune system required for optimal antiviral immunity.

Indexed as

Immunity, InnateAdaptive ImmunityAnimalsAnti-Bacterial AgentsArenaviridae InfectionsBacteriaDisease SusceptibilityInterferonsLymphocytic choriomeningitis virusMacrophagesMiceMice, Inbred C57BLOrthomyxoviridaeOrthomyxoviridae InfectionsVirusesAnti-Bacterial AgentsInterferons

Identifiers

PMID22705104
PMCPMC3679670
OpenAlexW1998653357

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.