Evidence map›Paper›PMID 22703342›Full record

ArticleAntioxidants & redox signaling2013

Transcriptional regulation of yeast oxidative phosphorylation hypoxic genes by oxidative stress.

Jingjing Liu, Antoni Barrientos

Open access · greenAbstract read
In one paragraph

Article in Antioxidants & redox signaling, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 46 citations in OpenAlex.

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  12. Strain Degeneration inJournal of fungi (Basel, Switzerland) · 2021
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  20. Respiratory chain supercomplexes: Structures, function and biogenesis.Seminars in cell & developmental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jingjing Liu1 Department of Biochemistry & Molecular Biology, University of Miami Miller School of Medicine , Miami, Florida.
Antoni Barrientos
University of Miami · US

Funding

CYTOCHROME C OXIDASE IN HEALTH AND DISEASER01GM071775 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRIENTOS, ANTONI · 2006 to 2015
$3.1M
NIGMS NIH HHS GM071775NIGMS NIH HHS R01 GM071775
6 · The paper itself

Abstract

aimsMitochondrial cytochrome c oxidase (COX) subunit 5 and cytochrome c (Cyc) exist in two isoforms, transcriptionally regulated by oxygen in yeast. The gene pair COX5a/CYC1 encodes the normoxic isoforms (Cox5a and iso1-Cyc) and the gene pair COX5b/CYC7 encodes the hypoxic isoforms (Cox5b and iso2-Cyc). Rox1 is a transcriptional repressor of COX5b/CYC7 in normoxia. COX5b is additionally repressed by Ord1. Here, we investigated whether these pathways respond to environmental and mitochondria-generated oxidative stress.

resultsThe superoxide inducer menadione triggered a significant de-repression of COX5b and CYC7. Hydrogen peroxide elicited milder de-repression effects that were enhanced in the absence of Yap1, a key determinant in oxidative stress resistance. COX5b/CYC7 was also de-repressed in wild-type cells treated with antimycin A, a mitochondrial bc1 complex inhibitor that increases superoxide production. Exposure to menadione and H2O2 enhanced both, Hap1-independent expression of ROX1 and Rox1 steady-state levels without affecting Ord1. However, oxidative stress lowered the occupancy of Rox1 on COX5b and CYC7 promoters, thus inducing their de-repression. INNOVATION: Reactive oxygen species (ROS)-induced hypoxic gene expression in normoxia involves the oxygen-responding Rox1 transcriptional machinery. Contrary to what occurs in hypoxia, ROS enhances Rox1 accumulation. However, its transcriptional repression capacity is compromised.

conclusionROS induce expression of hypoxic COX5b and CYC7 genes through an Ord1- and Hap1-independent mechanism that promotes the release of Rox1 from or limits the access of Rox1 to its hypoxic gene promoter targets.

Indexed as

Oxidative PhosphorylationOxidative StressTranscription, GeneticCytochrome c GroupElectron Transport Complex IVHypoxiaMitochondriaOxygenReactive Oxygen SpeciesRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCox5b protein, S cerevisiaeCytochrome c GroupElectron Transport Complex IVOxygenReactive Oxygen SpeciesRepressor ProteinsROX1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID22703342
PMCPMC3852346
OpenAlexW2088170262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.