Evidence map›Paper›PMID 22701739›Full record

ArticlePloS one2012

Divergent roles of clock genes in retinal and suprachiasmatic nucleus circadian oscillators.

Guo-Xiang Ruan, Karen L Gamble, Michael L Risner, Laurel A Young, Douglas G McMahon

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 60 citations in OpenAlex.

  1. Circadian IOP Rhythm in Rats Is Driven by Neural Signals From the Brain.Investigative ophthalmology & visual science · 2026
    Article
  2. Article
  3. Article
  4. Bmal1 integrates circadian function and temperature sensing in the suprachiasmatic nucleus.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Ocular Clocks: Adapting Mechanisms for Eye Functions and Health.Investigative ophthalmology & visual science · 2018
    Review
  11. Differential roles for cryptochromes in the mammalian retinal clock.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2018
    Article
  12. Aging Alters Circadian Rhythms in the Mouse Eye.Journal of biological rhythms · 2018
    Article
  13. Circadian rhythms, refractive development, and myopia.Ophthalmic & physiological optics : the journal of the British College of Ophthalmic Opticians (Optometrists) · 2018
    Review
  14. Article
  15. Zebrafish Lacking Circadian GeneFrontiers in behavioral neuroscience · 2018
    Article
  16. The Retinal Circadian Clock and Photoreceptor Viability.Advances in experimental medicine and biology · 2018
    Review
  17. Article
  18. Article
  19. The Retina and Other Light-sensitive Ocular Clocks.Journal of biological rhythms · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Guo-Xiang RuanDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Karen L Gamble
Michael L Risner
Laurel A Young
Douglas G McMahon
Vanderbilt University · US

Funding

Program in NeurogenomicsT32MH065215 · NIMH · VANDERBILT UNIVERSITY · PI ROGER J COLBRAN · 2002 to 2026
$6.4M
Circadian Organization of the RetinaR01EY015815 · NEI · VANDERBILT UNIVERSITY · PI MCMAHON, DOUGLAS G · 2004 to 2013
$3.3M
NEI NIH HHS R01 EY015815NEI NIH HHS R01 EY15815NIMH NIH HHS T32 MH065215
6 · The paper itself

Abstract

The retina is both a sensory organ and a self-sustained circadian clock. Gene targeting studies have revealed that mammalian circadian clocks generate molecular circadian rhythms through coupled transcription/translation feedback loops which involve 6 core clock genes, namely Period (Per) 1 and 2, Cryptochrome (Cry) 1 and 2, Clock, and Bmal1 and that the roles of individual clock genes in rhythms generation are tissue-specific. However, the mechanisms of molecular circadian rhythms in the mammalian retina are incompletely understood and the extent to which retinal neural clocks share mechanisms with the suprachiasmatic nucleus (SCN), the central neural clock, is unclear. In the present study, we examined the rhythmic amplitude and period of real-time bioluminescence rhythms in explants of retina from Per1-, Per2-, Per3-, Cry1-, Cry2-, and Clock-deficient mice that carried transgenic PERIOD2::LUCIFERASE (PER2::LUC) or Period1::luciferase (Per1::luc) circadian reporters. Per1-, Cry1- and Clock-deficient retinal and SCN explants showed weakened or disrupted rhythms, with stronger effects in retina compared to SCN. Per2, Per3, and Cry2 were individually dispensable for sustained rhythms in both tissues. Retinal and SCN explants from double knockouts of Cry1 and Cry2 were arrhythmic. Gene effects on period were divergent with reduction in the number of Per1 alleles shortening circadian period in retina, but lengthening it in SCN, and knockout of Per3 substantially shortening retinal clock period, but leaving SCN unaffected. Thus, the retinal neural clock has a unique pattern of clock gene dependence at the tissue level that it is similar in pattern, but more severe in degree, than the SCN neural clock, with divergent clock gene regulation of rhythmic period.

Indexed as

Analysis of VarianceAnimalsCircadian ClocksCircadian RhythmCLOCK ProteinsCryptochromesLuciferasesLuminescent ProteinsMiceMice, KnockoutPeriod Circadian ProteinsRetinaStatistics, NonparametricSuprachiasmatic NucleusClock protein, mouseCLOCK ProteinsCryptochromesLuciferasesLuminescent ProteinsPeriod Circadian Proteins

Identifiers

PMID22701739
PMCPMC3372489
OpenAlexW1983790320

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.